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Mouse SNP Summary
Symbol
Name
ID
Tssr15872
transcription start site region 15872
MGI:5943639

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Showing SNP(s) 1 - 62 of 62

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29613305
MGI SNP Detail
Chr1:194811805 Cr1l within coordinates of
Tssr15872 1996 bp downstream
SNP C/T T T T T T T T T T T C C C T T
rs580827290
MGI SNP Detail
Chr1:194811946 Cr1l within coordinates of
Tssr15872 1855 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583954526
MGI SNP Detail
Chr1:194811952 Cr1l within coordinates of
Tssr15872 1849 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs579372012
MGI SNP Detail
Chr1:194812160 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 1641 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29613304
MGI SNP Detail
Chr1:194812174 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 1627 bp downstream
SNP C/T C C C C C C C C C C C T C C
rs582729228
MGI SNP Detail
Chr1:194812230 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 1571 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs13471839
MGI SNP Detail
Chr1:194812231 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 1570 bp downstream
SNP A/T T T T T T T T T T T A A T T T
rs579099540
MGI SNP Detail
Chr1:194812236 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 1565 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G G T T G G G G T T T T T T T G
rs29612413
MGI SNP Detail
Chr1:194812313 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 1488 bp downstream
SNP C/G G G G G G G G G G G G G C G G
rs582560359
MGI SNP Detail
Chr1:194812366 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 1435 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585837570
MGI SNP Detail
Chr1:194812459 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 1342 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs579705729
MGI SNP Detail
Chr1:194812478 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 1323 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29612412
MGI SNP Detail
Chr1:194812598 Cr1l within coordinates of
Rr29235 within coordinates of
Rr396746 within coordinates of
Tssr15872 1203 bp downstream
SNP A/T A A A A A A A A A A A A T A A
rs229398856
MGI SNP Detail
Chr1:194812702 Cr1l within coordinates of
Rr29235 within coordinates of
Rr396746 within coordinates of
Tssr15872 1099 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T C T T
rs581956008
MGI SNP Detail
Chr1:194812740 Cr1l within coordinates of
Rr29235 within coordinates of
Rr396746 within coordinates of
Tssr15872 1061 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs585021414
MGI SNP Detail
Chr1:194812799 Cr1l within coordinates of
Rr29235 within coordinates of
Rr396746 within coordinates of
Tssr15872 1002 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29612411
MGI SNP Detail
Chr1:194812828 Cr1l within coordinates of
Rr29235 within coordinates of
Rr396746 within coordinates of
Tssr15872 973 bp downstream
SNP C/T T T T T T T T T T T T T C T T
rs29612410
MGI SNP Detail
Chr1:194812924 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 877 bp downstream
SNP A/G G G G G G G G G G G A G A G G
rs580491946
MGI SNP Detail
Chr1:194812973 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 828 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs584166818
MGI SNP Detail
Chr1:194813023 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 778 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs29612409
MGI SNP Detail
Chr1:194813049 Cr1l within coordinates of
Rr29235 within coordinates of
Tssr15872 752 bp downstream
SNP A/T A A A A A A A A A A A A T A A
rs29612408
MGI SNP Detail
Chr1:194813089 Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 712 bp downstream
SNP C/T T T T T T T T T T T C C C T T
rs587544451
MGI SNP Detail
Chr1:194813090 Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 711 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580255935
MGI SNP Detail
Chr1:194813175 Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 626 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs583438755
MGI SNP Detail
Chr1:194813275 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 526 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586994449
MGI SNP Detail
Chr1:194813316 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 485 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29612407
MGI SNP Detail
Chr1:194813322 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 479 bp downstream
SNP G/T G G G G G G G G G G G T G G G
rs234193596
MGI SNP Detail
Chr1:194813327 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 474 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C T C C
rs29612406
MGI SNP Detail
Chr1:194813328 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 473 bp downstream
SNP A/G G G G G G G G G G G A G G G
rs29612405
MGI SNP Detail
Chr1:194813397 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 404 bp downstream
SNP A/G G G G G G G G G G G G A G G G
rs580867803
MGI SNP Detail
Chr1:194813415 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 386 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs584264247
MGI SNP Detail
Chr1:194813443 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 358 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586142288
MGI SNP Detail
Chr1:194813450 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 351 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29612404
MGI SNP Detail
Chr1:194813467 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 334 bp downstream
SNP C/G G G G G G G G G G G G G C G G
rs29611453
MGI SNP Detail
Chr1:194813530 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 271 bp downstream
SNP C/T T T T T T T T T T T C T C T T
rs222189325
MGI SNP Detail
Chr1:194813531 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 270 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T G G T T G G G G T T T G T T T G
rs29611452
MGI SNP Detail
Chr1:194813652 Cpgi1251 within coordinates of
Cr1l within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15870 within coordinates of
Tssr15872 149 bp downstream
SNP C/T T T T T T T T T T T C T T T T
rs8253317
MGI SNP Detail
Chr1:194813766 Cr1l within coordinates of
Gm32313 within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 35 bp downstream
SNP C/T T T T T T T T T T T T T T T C
rs8253316
MGI SNP Detail
Chr1:194813843 Cr1l within coordinates of
Gm32313 within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 31 bp upstream
SNP A/G G G G G G G G G G G G G G G A
rs29611451
MGI SNP Detail
Chr1:194813877 Cr1l within coordinates of
Gm32313 within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 65 bp upstream
Tssr15874 within coordinates of
SNP A/G A A A A A A A A A A G A A A A
rs8253315
MGI SNP Detail
Chr1:194813882 Gm32313 within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 70 bp upstream
Tssr15874 within coordinates of
SNP A/T T T T T T T T T T T T T T T A
rs8253314
MGI SNP Detail
Chr1:194813905 Gm32313 within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 93 bp upstream
SNP A/G G G G G G G G G G G G G G G A
rs578712322
MGI SNP Detail
Chr1:194813906 Gm32313 within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 94 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29611450
MGI SNP Detail
Chr1:194813907 Gm32313 within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 95 bp upstream
SNP G/T T T T T T T T T T T G T T T T
rs581939812
MGI SNP Detail
Chr1:194814010 Gm32313 within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 198 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29611449
MGI SNP Detail
Chr1:194814030 Gm32313 within coordinates of
Rr29235 within coordinates of
Rr372684 within coordinates of
Tssr15872 218 bp upstream
SNP A/C C C C C C C C C C C A C C C C
rs585709681
MGI SNP Detail
Chr1:194814296 Gm32313 within coordinates of
Rr29235 within coordinates of
Tssr15872 484 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T T T T T T T T T C T T T T
rs49596190
MGI SNP Detail
Chr1:194814312 Gm32313 within coordinates of
Rr29235 within coordinates of
Tssr15872 500 bp upstream
SNP T T T T
rs579699432
MGI SNP Detail
Chr1:194814353 Gm32313 within coordinates of
Rr29235 within coordinates of
Tssr15872 541 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs581890766
MGI SNP Detail
Chr1:194814536 Gm32313 within coordinates of
Rr29235 within coordinates of
Tssr15872 724 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586566688
MGI SNP Detail
Chr1:194814647 Gm32313 within coordinates of
Rr29235 within coordinates of
Tssr15872 835 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs29611448
MGI SNP Detail
Chr1:194814819 Gm32313 within coordinates of
Tssr15872 1007 bp upstream
SNP A/G A A A A A A A A A G G A G A A
rs580373219
MGI SNP Detail
Chr1:194814866 Gm32313 within coordinates of
Tssr15872 1054 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs583730964
MGI SNP Detail
Chr1:194814901 Gm32313 within coordinates of
Tssr15872 1089 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs586695028
MGI SNP Detail
Chr1:194815177 Gm32313 within coordinates of
Tssr15872 1365 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220982453
MGI SNP Detail
Chr1:194815179 Gm32313 within coordinates of
Tssr15872 1367 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A G G A A G G G G A A A G A A A G
rs239017527
MGI SNP Detail
Chr1:194815264 Gm32313 within coordinates of
Tssr15872 1452 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C T T C C T T T T C C C C C C C T
rs263442141
MGI SNP Detail
Chr1:194815283 Gm32313 within coordinates of
Tssr15872 1471 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G A A G G A A A A G G G A G G G A
rs229819431
MGI SNP Detail
Chr1:194815415 Gm32313 within coordinates of
Tssr15872 1603 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C T T T T C C C C C C C
rs251129479
MGI SNP Detail
Chr1:194815549 Gm32313 within coordinates of
Tssr15872 1737 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G G A A G G A A G G G G A A A G A G A G
rs579877213
MGI SNP Detail
Chr1:194815597 Gm32313 within coordinates of
Tssr15872 1785 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A A T T A A A A T T T T T T T A
rs264487980
MGI SNP Detail
Chr1:194815607 Gm32313 within coordinates of
Tssr15872 1795 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G A G G
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Showing SNP(s) 1 - 62 of 62

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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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