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Mouse SNP Summary
Symbol
Name
ID 		Tssr16304
transcription start site region 16304
MGI:5944071

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Showing SNP(s) 1 - 70 of 70

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218539383
MGI SNP Detail		 Chr2:16359179 Tssr16304 1926 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs236968375
MGI SNP Detail		 Chr2:16359181 Tssr16304 1924 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T T T T C C T T T T T C T C T T C C
rs262307019
MGI SNP Detail		 Chr2:16359182 Tssr16304 1923 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T T T T C C T T T T T C T C T T C
rs223771001
MGI SNP Detail		 Chr2:16359208 Tssr16304 1897 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T C T T T C T T T T T C C T T T T T C T C T T C C
rs246314407
MGI SNP Detail		 Chr2:16359298 Tssr16304 1807 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs263769488
MGI SNP Detail		 Chr2:16359357 Tssr16304 1748 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G A G G G A G G G G G A A G G G G G A G G G G A A
rs221125865
MGI SNP Detail		 Chr2:16359381 Tssr16304 1724 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs241872739
MGI SNP Detail		 Chr2:16359457 Tssr16304 1648 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259090723
MGI SNP Detail		 Chr2:16359460 Tssr16304 1645 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27119770
MGI SNP Detail		 Chr2:16359498 Tssr16304 1607 bp upstream
 SNP A/G G G G G G G G G G A G G A G
rs27119769
MGI SNP Detail		 Chr2:16359576 Tssr16304 1529 bp upstream
 SNP A/C A A A A A A C A A A C A A C A
rs265343540
MGI SNP Detail		 Chr2:16359971 Tssr16304 1134 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs230159171
MGI SNP Detail		 Chr2:16360036 Tssr16304 1069 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258150609
MGI SNP Detail		 Chr2:16360061 Tssr16304 1044 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27119768
MGI SNP Detail		 Chr2:16360147 Tssr16304 958 bp upstream
 SNP A/G A A A A A A G A A A G A A G G
rs27119767
MGI SNP Detail		 Chr2:16360381 Tssr16304 724 bp upstream
 SNP A/G A A A A A A G A A A G A A G A
rs247933683
MGI SNP Detail		 Chr2:16360600 Cpgi11224 within coordinates of
Rr372823 within coordinates of
Tssr16304 505 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212566406
MGI SNP Detail		 Chr2:16360619 Cpgi11224 within coordinates of
Rr372823 within coordinates of
Tssr16304 486 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27119766
MGI SNP Detail		 Chr2:16360674 Cpgi11224 within coordinates of
Rr372823 within coordinates of
Tssr16304 431 bp upstream
 SNP A/C A A A A A A C A A A C A A C A
rs257522101
MGI SNP Detail		 Chr2:16360751 Cpgi11224 within coordinates of
Rr372823 within coordinates of
Tssr16304 354 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs221887512
MGI SNP Detail		 Chr2:16360811 Cpgi11224 within coordinates of
Rr372823 within coordinates of
Tssr16304 294 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27119765
MGI SNP Detail		 Chr2:16360880 Cpgi11224 within coordinates of
Rr372823 within coordinates of
Tssr16304 225 bp upstream
 SNP G/T G G G G G G G G G T G G T G
rs587481795
MGI SNP Detail		 Chr2:16360915 Cpgi11224 within coordinates of
Rr372823 within coordinates of
Tssr16304 190 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs263519952
MGI SNP Detail		 Chr2:16360949 Cpgi11224 within coordinates of
Rr372823 within coordinates of
Tssr16304 156 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs220966170
MGI SNP Detail		 Chr2:16361037 Cpgi11224 within coordinates of
Rr372823 within coordinates of
Tssr16304 68 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27119764
MGI SNP Detail		 Chr2:16361160 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 33 bp downstream
Tssr16305 within coordinates of
 SNP A/T A A A A A A A A A T A A T A
rs259397496
MGI SNP Detail		 Chr2:16361312 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 185 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs218993758
MGI SNP Detail		 Chr2:16361469 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 342 bp downstream
Tssr16309 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27119763
MGI SNP Detail		 Chr2:16361685 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 558 bp downstream
 SNP C/G G G G G G G G G G C G G C C
rs262811382
MGI SNP Detail		 Chr2:16361751 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 624 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C G G C C C C C G C G C C C G
rs230468975
MGI SNP Detail		 Chr2:16361752 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 625 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A G G A A A A A G A G A A A G
rs27119762
MGI SNP Detail		 Chr2:16361774 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 647 bp downstream
 SNP C/T T T T T T T T T T C T T C C
rs258974527
MGI SNP Detail		 Chr2:16361777 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 650 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs229090247
MGI SNP Detail		 Chr2:16361785 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 658 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs247997222
MGI SNP Detail		 Chr2:16361807 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 680 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212879500
MGI SNP Detail		 Chr2:16361869 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 742 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G A A
rs27119761
MGI SNP Detail		 Chr2:16361887 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 760 bp downstream
 SNP A/G G G G G G G G G G A G G A
rs255929248
MGI SNP Detail		 Chr2:16361889 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 762 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T C C T T T T T C T C T T C C
rs27119760
MGI SNP Detail		 Chr2:16361949 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 822 bp downstream
 SNP C/T C C C C C C C C C C T C C C C
rs27119759
MGI SNP Detail		 Chr2:16361954 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 827 bp downstream
 SNP A/G G G G G G G G G G G G G G G A
rs27119758
MGI SNP Detail		 Chr2:16362014 Cpgi11224 within coordinates of
Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 887 bp downstream
 SNP C/G G G G G G G G G G G G G G G C
rs27119757
MGI SNP Detail		 Chr2:16362067 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 940 bp downstream
 SNP A/G A A A A A G A A A G A A G A
rs221021381
MGI SNP Detail		 Chr2:16362107 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 980 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235459642
MGI SNP Detail		 Chr2:16362170 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1043 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs27119756
MGI SNP Detail		 Chr2:16362204 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1077 bp downstream
 SNP A/G A A A A A A G A A A G A A G G
rs27119755
MGI SNP Detail		 Chr2:16362246 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1119 bp downstream
 SNP C/T C C C C C C T C C C T C C T T
rs27119754
MGI SNP Detail		 Chr2:16362259 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1132 bp downstream
 SNP A/G A A A A A A G A A A G A A G G
rs262494557
MGI SNP Detail		 Chr2:16362295 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1168 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C T C C C T C C C C C T T C C C C C T C T C C T T
rs222600360
MGI SNP Detail		 Chr2:16362337 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1210 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27119753
MGI SNP Detail		 Chr2:16362426 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1299 bp downstream
 SNP A/T T T T T T T T T T T A T T A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27119752
MGI SNP Detail		 Chr2:16362457 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1330 bp downstream
 SNP A/G A A A A A A A A A A G A A G G
rs229370952
MGI SNP Detail		 Chr2:16362548 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1421 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27119751
MGI SNP Detail		 Chr2:16362555 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1428 bp downstream
 SNP A/G A A A A A A A A A A A A A A G
rs256652601
MGI SNP Detail		 Chr2:16362574 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1447 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G T G G G G G G T G G G G T T
rs228151000
MGI SNP Detail		 Chr2:16362591 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1464 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs27119750
MGI SNP Detail		 Chr2:16362612 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1485 bp downstream
 SNP A/G G G G G G G G G G G G G G A
rs213845413
MGI SNP Detail		 Chr2:16362630 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1503 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs232056344
MGI SNP Detail		 Chr2:16362635 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1508 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs244967257
MGI SNP Detail		 Chr2:16362670 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1543 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C T T
rs27119749
MGI SNP Detail		 Chr2:16362723 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1596 bp downstream
 SNP C/T T T T T T T T T T T C T T C T
rs234079645
MGI SNP Detail		 Chr2:16362739 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1612 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27119748
MGI SNP Detail		 Chr2:16362774 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1647 bp downstream
 SNP G/T G G G G G G G G G T G G T G
rs27119747
MGI SNP Detail		 Chr2:16362793 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1666 bp downstream
 SNP C/T T T T T T T C T T T C T T C C
rs27119746
MGI SNP Detail		 Chr2:16362815 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1688 bp downstream
 SNP A/G A A A A A A A A G A A G A
rs27119745
MGI SNP Detail		 Chr2:16362828 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1701 bp downstream
 SNP C/T C C C C C C C C C C C C C T
rs258197452
MGI SNP Detail		 Chr2:16362859 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1732 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222218790
MGI SNP Detail		 Chr2:16362869 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1742 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27119744
MGI SNP Detail		 Chr2:16362872 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1745 bp downstream
 SNP C/T C C C C C C C C C C T C C C C
rs27119743
MGI SNP Detail		 Chr2:16362977 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1850 bp downstream
 SNP C/T T T T T T T T T T T T T T T C
rs252888375
MGI SNP Detail		 Chr2:16362991 Plxdc2 within coordinates of
Rr372823 within coordinates of
Tssr16304 1864 bp downstream
 SNP A/C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G C G G G G G G A G G G G C C
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Showing SNP(s) 1 - 70 of 70
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory