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Mouse SNP Summary
Symbol
Name
ID 		Tssr16354
transcription start site region 16354
MGI:5944121

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Showing SNP(s) 1 - 49 of 49

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237068165
MGI SNP Detail		 Chr2:18030633 A930004D18Rik within coordinates of
Gm33085 within coordinates of
Rr552277 within coordinates of
Tssr16354 1912 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C G C C C C C C C G C C G C C C C C C C C C
rs264829412
MGI SNP Detail		 Chr2:18030650 A930004D18Rik within coordinates of
Gm33085 within coordinates of
Rr552277 within coordinates of
Tssr16354 1895 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27156753
MGI SNP Detail		 Chr2:18030651 A930004D18Rik within coordinates of
Gm33085 within coordinates of
Rr552277 within coordinates of
Tssr16354 1894 bp upstream
 SNP A/G A A G A G A
rs246859130
MGI SNP Detail		 Chr2:18030682 A930004D18Rik within coordinates of
Gm33085 within coordinates of
Rr552277 within coordinates of
Tssr16354 1863 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C C G C C G C C C C C C C C C
rs263201290
MGI SNP Detail		 Chr2:18030697 A930004D18Rik within coordinates of
Gm33085 within coordinates of
Rr552277 within coordinates of
Tssr16354 1848 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs227620112
MGI SNP Detail		 Chr2:18030757 A930004D18Rik within coordinates of
Gm33085 within coordinates of
Rr552277 within coordinates of
Tssr16354 1788 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T C T T T T
rs246797947
MGI SNP Detail		 Chr2:18030805 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Rr552277 within coordinates of
Tssr16354 1740 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C T C C C C
rs217431478
MGI SNP Detail		 Chr2:18030827 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Rr552277 within coordinates of
Tssr16354 1718 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C C T C C T C C C C C C C C C
rs223675396
MGI SNP Detail		 Chr2:18030871 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 1674 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G T G G G G G G G T G G T G G G G T G G G G
rs250129539
MGI SNP Detail		 Chr2:18030913 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 1632 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G T G G G G G G G T G G T G G G G G G G G G
rs214543456
MGI SNP Detail		 Chr2:18030957 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 1588 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G G A G G A G G G A G G G G
rs237371238
MGI SNP Detail		 Chr2:18031089 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 1456 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257703677
MGI SNP Detail		 Chr2:18031460 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 1085 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs216322499
MGI SNP Detail		 Chr2:18031481 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 1064 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T
rs234442247
MGI SNP Detail		 Chr2:18031580 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 965 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs254091514
MGI SNP Detail		 Chr2:18031712 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 833 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223217384
MGI SNP Detail		 Chr2:18031738 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 807 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G T T G G G G G G T G G T G G G G G G G G G
rs229752749
MGI SNP Detail		 Chr2:18031755 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 790 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs256108086
MGI SNP Detail		 Chr2:18031801 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 744 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs579371135
MGI SNP Detail		 Chr2:18031828 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Tssr16354 717 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A A G G G G G G A G G A G G G G G G G G G
rs265492901
MGI SNP Detail		 Chr2:18031852 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 693 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs27156752
MGI SNP Detail		 Chr2:18031872 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 673 bp upstream
 SNP A/G A G A G G A G
rs221443752
MGI SNP Detail		 Chr2:18031885 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 660 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A G G A A A A A A G A A G A A A A G A A A A
rs240904012
MGI SNP Detail		 Chr2:18032006 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 539 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs259957044
MGI SNP Detail		 Chr2:18032098 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 447 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223618555
MGI SNP Detail		 Chr2:18032108 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 437 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs254419243
MGI SNP Detail		 Chr2:18032122 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 423 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262477100
MGI SNP Detail		 Chr2:18032161 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 384 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231483376
MGI SNP Detail		 Chr2:18032174 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 371 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252635582
MGI SNP Detail		 Chr2:18032396 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552279 within coordinates of
Tssr16354 149 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216287479
MGI SNP Detail		 Chr2:18032469 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr367114 within coordinates of
Rr552281 within coordinates of
Tssr16354 76 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G A G G G G G G G A G G A G G G G G G G G G
rs235950813
MGI SNP Detail		 Chr2:18032500 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr367114 within coordinates of
Rr552281 within coordinates of
Tssr16354 45 bp upstream
 SNP A/T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs247662982
MGI SNP Detail		 Chr2:18032577 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 18 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A A G A A G A A A A A A A A
rs217111466
MGI SNP Detail		 Chr2:18032643 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 84 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs234386132
MGI SNP Detail		 Chr2:18032801 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Rr552282 within coordinates of
Tssr16354 242 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C T T C C C C C C T C C T C C T C T C C C C
rs261346779
MGI SNP Detail		 Chr2:18032802 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Rr552282 within coordinates of
Tssr16354 243 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T G G T T T T T T G T T G T T G T G T T T T
rs581886981
MGI SNP Detail		 Chr2:18033069 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 510 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs584202187
MGI SNP Detail		 Chr2:18033079 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 520 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222377313
MGI SNP Detail		 Chr2:18033133 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 574 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A G A A G A A A G A A A A
rs238911010
MGI SNP Detail		 Chr2:18033257 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 698 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs251158825
MGI SNP Detail		 Chr2:18033304 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 745 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs221387003
MGI SNP Detail		 Chr2:18033372 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 813 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240827756
MGI SNP Detail		 Chr2:18033443 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 884 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C G C C C C C C C C C C G C C C G C C C C
rs259917981
MGI SNP Detail		 Chr2:18033482 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 923 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs218010268
MGI SNP Detail		 Chr2:18033489 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552281 within coordinates of
Tssr16354 930 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T
rs242314638
MGI SNP Detail		 Chr2:18033752 A930004D18Rik within coordinates of
Cpgi11229 within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552283 within coordinates of
Tssr16354 1193 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265116623
MGI SNP Detail		 Chr2:18034206 A930004D18Rik within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Tssr16354 1647 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231120093
MGI SNP Detail		 Chr2:18034373 A930004D18Rik within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Tssr16354 1814 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248122280
MGI SNP Detail		 Chr2:18034486 A930004D18Rik within coordinates of
Gm13330 within coordinates of
Gm17762 within coordinates of
Gm33085 within coordinates of
Rr552284 within coordinates of
Tssr16354 1927 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 49 of 49
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
07/29/2025
MGI 6.24 		The Jackson Laboratory