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Mouse SNP Summary
Symbol
Name
ID 		Tssr16405
transcription start site region 16405
MGI:5944172

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251341784
MGI SNP Detail		 Chr2:19052891 Tssr16405 1968 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216271043
MGI SNP Detail		 Chr2:19052906 Tssr16405 1953 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234775237
MGI SNP Detail		 Chr2:19052907 Tssr16405 1952 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253419280
MGI SNP Detail		 Chr2:19052937 Tssr16405 1922 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs218212637
MGI SNP Detail		 Chr2:19052976 Rr63907 within coordinates of
Tssr16405 1883 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243697091
MGI SNP Detail		 Chr2:19053074 Rr63907 within coordinates of
Tssr16405 1785 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27128159
MGI SNP Detail		 Chr2:19053198 Rr63907 within coordinates of
Tssr16405 1661 bp upstream
 SNP A/T A A A A A A T A A T A A T A
rs221636808
MGI SNP Detail		 Chr2:19053262 Rr63907 within coordinates of
Tssr16405 1597 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243726594
MGI SNP Detail		 Chr2:19053274 Rr63907 within coordinates of
Tssr16405 1585 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs258833017
MGI SNP Detail		 Chr2:19053293 Rr63907 within coordinates of
Tssr16405 1566 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228069772
MGI SNP Detail		 Chr2:19053300 Rr63907 within coordinates of
Tssr16405 1559 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27128158
MGI SNP Detail		 Chr2:19053339 Rr63907 within coordinates of
Tssr16405 1520 bp upstream
 SNP C/T T T T T T T C T T T C T T C T
rs261146978
MGI SNP Detail		 Chr2:19053428 Tssr16405 1431 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227529903
MGI SNP Detail		 Chr2:19053441 Tssr16405 1418 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs254361779
MGI SNP Detail		 Chr2:19053515 Tssr16405 1344 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs214039215
MGI SNP Detail		 Chr2:19053668 Tssr16405 1191 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27128157
MGI SNP Detail		 Chr2:19053693 Tssr16405 1166 bp upstream
 SNP C/G G G G G G G C G G G C G G C G
rs581331902
MGI SNP Detail		 Chr2:19053724 Tssr16405 1135 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs584471141
MGI SNP Detail		 Chr2:19053732 Tssr16405 1127 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs585160711
MGI SNP Detail		 Chr2:19053778 Tssr16405 1081 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245315705
MGI SNP Detail		 Chr2:19053926 Tssr16405 933 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27128156
MGI SNP Detail		 Chr2:19053939 Tssr16405 920 bp upstream
 SNP C/T C C C C C C T C C C T C C C C
rs27128155
MGI SNP Detail		 Chr2:19053965 Tssr16405 894 bp upstream
 SNP C/T T T T T T T C T T T T T T C T
rs253537996
MGI SNP Detail		 Chr2:19053967 Tssr16405 892 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs27128154
MGI SNP Detail		 Chr2:19053993 Tssr16405 866 bp upstream
 SNP C/T C C C C C C T C C C T C C T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs235680348
MGI SNP Detail		 Chr2:19054023 Tssr16405 836 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs262176386
MGI SNP Detail		 Chr2:19054083 Tssr16405 776 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs222345858
MGI SNP Detail		 Chr2:19054159 Tssr16405 700 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27128153
MGI SNP Detail		 Chr2:19054240 Tssr16405 619 bp upstream
 SNP C/T T C C T T T T T C T T T C T T T
rs252493750
MGI SNP Detail		 Chr2:19054393 Tssr16405 466 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs221502308
MGI SNP Detail		 Chr2:19054417 Tssr16405 442 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241950986
MGI SNP Detail		 Chr2:19054440 Tssr16405 419 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs261254115
MGI SNP Detail		 Chr2:19054458 Tssr16405 401 bp upstream
 SNP C/T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T C T T T
rs227941712
MGI SNP Detail		 Chr2:19054471 Tssr16405 388 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs242042147
MGI SNP Detail		 Chr2:19054583 Tssr16405 276 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs265045949
MGI SNP Detail		 Chr2:19054639 Tssr16405 220 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs231059302
MGI SNP Detail		 Chr2:19054641 Tssr16405 218 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs245438252
MGI SNP Detail		 Chr2:19054648 Tssr16405 211 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs258150166
MGI SNP Detail		 Chr2:19054666 Tssr16405 193 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs27128152
MGI SNP Detail		 Chr2:19054691 Tssr16405 168 bp upstream
 SNP A/G A A A A A A G A A A G A A G A
rs247754793
MGI SNP Detail		 Chr2:19054693 Tssr16405 166 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T A T T T T T T A T T T T T T T A T T T T
rs27128151
MGI SNP Detail		 Chr2:19054825 Tssr16405 34 bp upstream
 SNP C/T T T T T T T C T T T C T T C T
rs27128150
MGI SNP Detail		 Chr2:19054924 Tssr16405 35 bp downstream
 SNP C/T T T T T T T C T T T C T T C T
rs27128149
MGI SNP Detail		 Chr2:19054941 Tssr16405 52 bp downstream
 SNP A/G G G G G G G A G G G A G G A G
rs215536946
MGI SNP Detail		 Chr2:19054949 Tssr16405 60 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232480427
MGI SNP Detail		 Chr2:19054978 Tssr16405 89 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27128148
MGI SNP Detail		 Chr2:19055053 Tssr16405 164 bp downstream
 SNP A/C A A A A A A A A A C A A C A
rs221440976
MGI SNP Detail		 Chr2:19055143 Gm75706 within coordinates of
Tssr16405 254 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs29769274
MGI SNP Detail		 Chr2:19055322 Gm75706 within coordinates of
Tssr16405 433 bp downstream
 SNP C/T T C T C
rs27128147
MGI SNP Detail		 Chr2:19055397 Gm75706 within coordinates of
Tssr16405 508 bp downstream
 SNP C/T C C C C C C T C C C T C C T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27128146
MGI SNP Detail		 Chr2:19055471 Gm75706 within coordinates of
Tssr16405 582 bp downstream
 SNP C/T C C C C C C T C C C T C C T C
rs245036070
MGI SNP Detail		 Chr2:19055593 Gm75706 within coordinates of
Tssr16405 704 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262288346
MGI SNP Detail		 Chr2:19055671 Gm75706 within coordinates of
Tssr16405 782 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs223017023
MGI SNP Detail		 Chr2:19055689 Gm75706 within coordinates of
Tssr16405 800 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs239357563
MGI SNP Detail		 Chr2:19055694 Gm75706 within coordinates of
Tssr16405 805 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258297935
MGI SNP Detail		 Chr2:19055701 Gm75706 within coordinates of
Tssr16405 812 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G
rs27128145
MGI SNP Detail		 Chr2:19055828 Gm75706 within coordinates of
Tssr16405 939 bp downstream
 SNP C/T C C C C C C C C C C T C C T C
rs247510142
MGI SNP Detail		 Chr2:19055916 Gm75706 within coordinates of
Tssr16405 1027 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs27128144
MGI SNP Detail		 Chr2:19056050 Gm75706 within coordinates of
Tssr16405 1161 bp downstream
 SNP A/C C C C C C C C C C C A C C A C
rs229282889
MGI SNP Detail		 Chr2:19056104 Gm75706 within coordinates of
Tssr16405 1215 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27128143
MGI SNP Detail		 Chr2:19056111 Gm75706 within coordinates of
Tssr16405 1222 bp downstream
 SNP C/T T T T T T T C T T T C T T C T
rs215042677
MGI SNP Detail		 Chr2:19056172 Gm75706 within coordinates of
Tssr16405 1283 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27128142
MGI SNP Detail		 Chr2:19056177 Gm75706 within coordinates of
Tssr16405 1288 bp downstream
 SNP A/G G G G G G G G G G A G G A G
rs246212047
MGI SNP Detail		 Chr2:19056179 Gm75706 within coordinates of
Tssr16405 1290 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs215683220
MGI SNP Detail		 Chr2:19056214 Gm75706 within coordinates of
Tssr16405 1325 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs27128141
MGI SNP Detail		 Chr2:19056261 Gm75706 within coordinates of
Tssr16405 1372 bp downstream
 SNP C/T T T T T T T T T T T C T T C T
rs260622550
MGI SNP Detail		 Chr2:19056278 Gm75706 within coordinates of
Tssr16405 1389 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219718636
MGI SNP Detail		 Chr2:19056356 Gm75706 within coordinates of
Tssr16405 1467 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27128140
MGI SNP Detail		 Chr2:19056370 Gm75706 within coordinates of
Tssr16405 1481 bp downstream
 SNP A/G G G G G G G G G G G A G G G G
rs235408745
MGI SNP Detail		 Chr2:19056447 Gm75706 within coordinates of
Tssr16405 1558 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs262003172
MGI SNP Detail		 Chr2:19056454 Gm75706 within coordinates of
Tssr16405 1565 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs219919411
MGI SNP Detail		 Chr2:19056615 Gm75706 within coordinates of
Tssr16405 1726 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239091344
MGI SNP Detail		 Chr2:19056618 Gm75706 within coordinates of
Tssr16405 1729 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27128139
MGI SNP Detail		 Chr2:19056620 Gm75706 within coordinates of
Tssr16405 1731 bp downstream
 SNP C/T T T T T T T C T T T T T T T T
rs222081396
MGI SNP Detail		 Chr2:19056662 Gm75706 within coordinates of
Tssr16405 1773 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251666220
MGI SNP Detail		 Chr2:19056766 Gm75706 within coordinates of
Tssr16405 1877 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261536856
MGI SNP Detail		 Chr2:19056779 Gm75706 within coordinates of
Tssr16405 1890 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27128138
MGI SNP Detail		 Chr2:19056799 Gm75706 within coordinates of
Tssr16405 1910 bp downstream
 SNP A/G A A A A A G A A A G A A G A
rs243549731
MGI SNP Detail		 Chr2:19056863 Gm75706 within coordinates of
Tssr16405 1974 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265393038
MGI SNP Detail		 Chr2:19056878 Gm75706 within coordinates of
Tssr16405 1989 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C
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Showing SNP(s) 1 - 80 of 80
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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