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Mouse SNP Summary
Symbol
Name
ID 		Tssr17726
transcription start site region 17726
MGI:5945493

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Showing SNP(s) 1 - 72 of 72

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239029061
MGI SNP Detail		 Chr2:52313077 Arl5a within coordinates of
Tssr17726 1939 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs253243294
MGI SNP Detail		 Chr2:52313166 Arl5a within coordinates of
Tssr17726 1850 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223693463
MGI SNP Detail		 Chr2:52313174 Arl5a within coordinates of
Tssr17726 1842 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs27914817
MGI SNP Detail		 Chr2:52313215 Arl5a within coordinates of
Tssr17726 1801 bp upstream
 SNP A/G G G G G A G G G G G G
rs250609932
MGI SNP Detail		 Chr2:52313216 Arl5a within coordinates of
Tssr17726 1800 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218354107
MGI SNP Detail		 Chr2:52313271 Arl5a within coordinates of
Tssr17726 1745 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247082378
MGI SNP Detail		 Chr2:52313273 Arl5a within coordinates of
Tssr17726 1743 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27914816
MGI SNP Detail		 Chr2:52313276 Arl5a within coordinates of
Tssr17726 1740 bp upstream
 SNP G/T G G G T G G G G G
rs233220103
MGI SNP Detail		 Chr2:52313312 Arl5a within coordinates of
Tssr17726 1704 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245169911
MGI SNP Detail		 Chr2:52313316 Arl5a within coordinates of
Tssr17726 1700 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259874741
MGI SNP Detail		 Chr2:52313343 Arl5a within coordinates of
Tssr17726 1673 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs48028969
MGI SNP Detail		 Chr2:52313595 Arl5a within coordinates of
Tssr17726 1421 bp upstream
 SNP A/G G A
rs228233290
MGI SNP Detail		 Chr2:52313644 Arl5a within coordinates of
Tssr17726 1372 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs582111428
MGI SNP Detail		 Chr2:52313862 Arl5a within coordinates of
Tssr17726 1154 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T C C T T C T T T T C T T T T T C T T T T T T T T T T T T T C T T T T
rs586302074
MGI SNP Detail		 Chr2:52313919 Arl5a within coordinates of
Tssr17726 1097 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242999242
MGI SNP Detail		 Chr2:52313981 Arl5a within coordinates of
Tssr17726 1035 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs211940697
MGI SNP Detail		 Chr2:52314023 Arl5a within coordinates of
Tssr17726 993 bp upstream
 SNP C/G/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C G C C C C
rs230670423
MGI SNP Detail		 Chr2:52314027 Arl5a within coordinates of
Tssr17726 989 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs46885925
MGI SNP Detail		 Chr2:52314036 Arl5a within coordinates of
Tssr17726 980 bp upstream
 SNP T T T
rs228913790
MGI SNP Detail		 Chr2:52314139 Arl5a within coordinates of
Tssr17726 877 bp upstream
 SNP G G G
rs27914815
MGI SNP Detail		 Chr2:52314318 Arl5a within coordinates of
Cpgi11647 within coordinates of
Tssr17726 698 bp upstream
 SNP A/G G G G G G A G G A G G G
rs246847170
MGI SNP Detail		 Chr2:52314365 Arl5a within coordinates of
Cpgi11647 within coordinates of
Tssr17726 651 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T C T T T C T T T T C T T T T T T T T T T T T T T T T T T T C T T T T
rs217817818
MGI SNP Detail		 Chr2:52314817 Arl5a within coordinates of
Cpgi11647 within coordinates of
Tssr17726 199 bp upstream
Tssr24072 within coordinates of
 SNP A/G A A A G G G G A A G G G G A A G A G A G G G A G G A A G A A G A A A G A G A G G A A G
rs235822927
MGI SNP Detail		 Chr2:52314951 Cpgi11647 within coordinates of
Tssr17726 65 bp upstream
Tssr494 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs579312574
MGI SNP Detail		 Chr2:52314989 Cpgi11647 within coordinates of
Tssr17726 27 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250669237
MGI SNP Detail		 Chr2:52315077 A430018G15Rik within coordinates of
Cpgi11647 within coordinates of
Tssr17726 44 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs220437835
MGI SNP Detail		 Chr2:52315080 A430018G15Rik within coordinates of
Cpgi11647 within coordinates of
Tssr17726 47 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs237144326
MGI SNP Detail		 Chr2:52315103 A430018G15Rik within coordinates of
Cpgi11647 within coordinates of
Tssr17726 70 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A G A A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs254165378
MGI SNP Detail		 Chr2:52315134 A430018G15Rik within coordinates of
Cpgi11647 within coordinates of
Tssr17726 101 bp downstream
 SNP C C C
rs225033735
MGI SNP Detail		 Chr2:52315145 A430018G15Rik within coordinates of
Cpgi11647 within coordinates of
Tssr17726 112 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs239345945
MGI SNP Detail		 Chr2:52315155 A430018G15Rik within coordinates of
Cpgi11647 within coordinates of
Tssr17726 122 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs49880247
MGI SNP Detail		 Chr2:52315199 A430018G15Rik within coordinates of
Tssr17726 166 bp downstream
 SNP T T T T T
rs221905505
MGI SNP Detail		 Chr2:52315200 A430018G15Rik within coordinates of
Tssr17726 167 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236675593
MGI SNP Detail		 Chr2:52315308 A430018G15Rik within coordinates of
Tssr17726 275 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs253760933
MGI SNP Detail		 Chr2:52315310 A430018G15Rik within coordinates of
Tssr17726 277 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231050210
MGI SNP Detail		 Chr2:52315350 A430018G15Rik within coordinates of
Tssr17726 317 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs250458292
MGI SNP Detail		 Chr2:52315365 A430018G15Rik within coordinates of
Tssr17726 332 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265664802
MGI SNP Detail		 Chr2:52315385 A430018G15Rik within coordinates of
Tssr17726 352 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G T T G G T G G G G T G G G G G T G G G G G G G G G G G G G G T G G G G
rs581664871
MGI SNP Detail		 Chr2:52315420 A430018G15Rik within coordinates of
Tssr17726 387 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs29717937
MGI SNP Detail		 Chr2:52315510 A430018G15Rik within coordinates of
Tssr17726 477 bp downstream
 SNP A/G G A A A
rs248522029
MGI SNP Detail		 Chr2:52315586 A430018G15Rik within coordinates of
Tssr17726 553 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216390856
MGI SNP Detail		 Chr2:52315657 A430018G15Rik within coordinates of
Tssr17726 624 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235903430
MGI SNP Detail		 Chr2:52315665 A430018G15Rik within coordinates of
Tssr17726 632 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33642007
MGI SNP Detail		 Chr2:52315704 A430018G15Rik within coordinates of
Tssr17726 671 bp downstream
 SNP G/T G T G G G
rs212265918
MGI SNP Detail		 Chr2:52315747 A430018G15Rik within coordinates of
Tssr17726 714 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A G G A A G A A A A G A A A A A G A A A A A A A A A A A A A A G A A A A
rs239350832
MGI SNP Detail		 Chr2:52315762 A430018G15Rik within coordinates of
Tssr17726 729 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257240266
MGI SNP Detail		 Chr2:52315792 A430018G15Rik within coordinates of
Tssr17726 759 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs225465146
MGI SNP Detail		 Chr2:52315827 A430018G15Rik within coordinates of
Tssr17726 794 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs585407159
MGI SNP Detail		 Chr2:52315913 A430018G15Rik within coordinates of
Tssr17726 880 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579645943
MGI SNP Detail		 Chr2:52315914 A430018G15Rik within coordinates of
Tssr17726 881 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233013692
MGI SNP Detail		 Chr2:52315917 A430018G15Rik within coordinates of
Tssr17726 884 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs253216289
MGI SNP Detail		 Chr2:52315936 A430018G15Rik within coordinates of
Tssr17726 903 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222020426
MGI SNP Detail		 Chr2:52316046 A430018G15Rik within coordinates of
Tssr17726 1013 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236640048
MGI SNP Detail		 Chr2:52316049 A430018G15Rik within coordinates of
Tssr17726 1016 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs32870849
MGI SNP Detail		 Chr2:52316140 A430018G15Rik within coordinates of
Tssr17726 1107 bp downstream
 SNP C/T C T C C C
rs29955882
MGI SNP Detail		 Chr2:52316166 A430018G15Rik within coordinates of
Tssr17726 1133 bp downstream
 SNP A/G A G A A A
rs33276398
MGI SNP Detail		 Chr2:52316191 A430018G15Rik within coordinates of
Tssr17726 1158 bp downstream
 SNP C/T T T C T T T
rs263453097
MGI SNP Detail		 Chr2:52316211 A430018G15Rik within coordinates of
Tssr17726 1178 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29583341
MGI SNP Detail		 Chr2:52316257 A430018G15Rik within coordinates of
Tssr17726 1224 bp downstream
 SNP A/G A A G A A A
rs248584482
MGI SNP Detail		 Chr2:52316287 A430018G15Rik within coordinates of
Tssr17726 1254 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs260344913
MGI SNP Detail		 Chr2:52316319 A430018G15Rik within coordinates of
Tssr17726 1286 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224693555
MGI SNP Detail		 Chr2:52316389 A430018G15Rik within coordinates of
Tssr17726 1356 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs29575652
MGI SNP Detail		 Chr2:52316409 A430018G15Rik within coordinates of
Tssr17726 1376 bp downstream
 SNP A/G A A A G
rs244603618
MGI SNP Detail		 Chr2:52316621 A430018G15Rik within coordinates of
Tssr17726 1588 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212777282
MGI SNP Detail		 Chr2:52316669 A430018G15Rik within coordinates of
Tssr17726 1636 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33671001
MGI SNP Detail		 Chr2:52316795 A430018G15Rik within coordinates of
Tssr17726 1762 bp downstream
 SNP C/T C C T C C C
rs255548384
MGI SNP Detail		 Chr2:52316847 A430018G15Rik within coordinates of
Tssr17726 1814 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs33120275
MGI SNP Detail		 Chr2:52316850 A430018G15Rik within coordinates of
Tssr17726 1817 bp downstream
 SNP A/G A A G A A A
rs232980898
MGI SNP Detail		 Chr2:52317004 A430018G15Rik within coordinates of
Tssr17726 1971 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs253364943
MGI SNP Detail		 Chr2:52317010 A430018G15Rik within coordinates of
Tssr17726 1977 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs32898153
MGI SNP Detail		 Chr2:52317021 A430018G15Rik within coordinates of
Tssr17726 1988 bp downstream
 SNP A/G A G A A A
rs32938369
MGI SNP Detail		 Chr2:52317032 A430018G15Rik within coordinates of
Tssr17726 1999 bp downstream
 SNP C/T T C T T T
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Showing SNP(s) 1 - 72 of 72
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory