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Mouse SNP Summary
Symbol
Name
ID 		Tssr17840
transcription start site region 17840
MGI:5945607

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218641613
MGI SNP Detail		 Chr2:58989241 Ccdc148 within coordinates of
Tssr17840 1941 bp upstream
 SNP A A A
rs247263818
MGI SNP Detail		 Chr2:58989258 Ccdc148 within coordinates of
Tssr17840 1924 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265979590
MGI SNP Detail		 Chr2:58989317 Ccdc148 within coordinates of
Tssr17840 1865 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs223620412
MGI SNP Detail		 Chr2:58989338 Ccdc148 within coordinates of
Tssr17840 1844 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs237328880
MGI SNP Detail		 Chr2:58989546 Ccdc148 within coordinates of
Tssr17840 1636 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs256860415
MGI SNP Detail		 Chr2:58989650 Ccdc148 within coordinates of
Tssr17840 1532 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs225811220
MGI SNP Detail		 Chr2:58989666 Ccdc148 within coordinates of
Tssr17840 1516 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246092237
MGI SNP Detail		 Chr2:58989684 Ccdc148 within coordinates of
Tssr17840 1498 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263352276
MGI SNP Detail		 Chr2:58989713 Ccdc148 within coordinates of
Tssr17840 1469 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs233483890
MGI SNP Detail		 Chr2:58989744 Ccdc148 within coordinates of
Tssr17840 1438 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs238654756
MGI SNP Detail		 Chr2:58989802 Ccdc148 within coordinates of
Tssr17840 1380 bp upstream
 SNP C C C
rs218872178
MGI SNP Detail		 Chr2:58989887 Ccdc148 within coordinates of
Tssr17840 1295 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223293364
MGI SNP Detail		 Chr2:58989935 Ccdc148 within coordinates of
Tssr17840 1247 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242817322
MGI SNP Detail		 Chr2:58989966 Ccdc148 within coordinates of
Tssr17840 1216 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213364077
MGI SNP Detail		 Chr2:58990041 Ccdc148 within coordinates of
Tssr17840 1141 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231813286
MGI SNP Detail		 Chr2:58990117 Ccdc148 within coordinates of
Tssr17840 1065 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580807482
MGI SNP Detail		 Chr2:58990212 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 970 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs262900993
MGI SNP Detail		 Chr2:58990247 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 935 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216630001
MGI SNP Detail		 Chr2:58990272 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 910 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241989271
MGI SNP Detail		 Chr2:58990273 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 909 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs260792981
MGI SNP Detail		 Chr2:58990318 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 864 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs218006193
MGI SNP Detail		 Chr2:58990357 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 825 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs237416786
MGI SNP Detail		 Chr2:58990413 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 769 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs250591015
MGI SNP Detail		 Chr2:58990455 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 727 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs219658682
MGI SNP Detail		 Chr2:58990470 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 712 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244198707
MGI SNP Detail		 Chr2:58990596 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 586 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs265614161
MGI SNP Detail		 Chr2:58990735 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 447 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs232720443
MGI SNP Detail		 Chr2:58990771 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 411 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs250566778
MGI SNP Detail		 Chr2:58990799 Ccdc148 within coordinates of
Rr56883 within coordinates of
Tssr17840 383 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs264564252
MGI SNP Detail		 Chr2:58990899 Ccdc148 within coordinates of
Cpgi11668 within coordinates of
Rr396983 within coordinates of
Rr56883 within coordinates of
Tssr17840 283 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs223689761
MGI SNP Detail		 Chr2:58991183 Cpgi11668 within coordinates of
Rr396983 within coordinates of
Rr56883 within coordinates of
Tssr17840 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs242877187
MGI SNP Detail		 Chr2:58991364 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 139 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs213421425
MGI SNP Detail		 Chr2:58991396 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 171 bp downstream
Tssr17842 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs225840776
MGI SNP Detail		 Chr2:58991593 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 368 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs251948540
MGI SNP Detail		 Chr2:58991646 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 421 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs216721503
MGI SNP Detail		 Chr2:58991799 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 574 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A T A A T A A T A A A T T T A A A A T A A T
rs239476568
MGI SNP Detail		 Chr2:58991800 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 575 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G A G G A G G A G G G A A A G G G G A G G A
rs264185693
MGI SNP Detail		 Chr2:58991870 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 645 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs211968903
MGI SNP Detail		 Chr2:58992069 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 844 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs230462581
MGI SNP Detail		 Chr2:58992147 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 922 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250648066
MGI SNP Detail		 Chr2:58992299 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1074 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A C A A A A
rs219708070
MGI SNP Detail		 Chr2:58992328 Cpgi11668 within coordinates of
Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1103 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247015983
MGI SNP Detail		 Chr2:58992565 Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1340 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G T G G G G T G G
rs258720098
MGI SNP Detail		 Chr2:58992640 Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1415 bp downstream
 SNP A/T A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs225250758
MGI SNP Detail		 Chr2:58992646 Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1421 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs247970624
MGI SNP Detail		 Chr2:58992715 Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1490 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A G A A A A A A A A A A A A
rs260219313
MGI SNP Detail		 Chr2:58992747 Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1522 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs262698806
MGI SNP Detail		 Chr2:58992941 Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1716 bp downstream
 SNP A/T T A
rs236955387
MGI SNP Detail		 Chr2:58992945 Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1720 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs255179238
MGI SNP Detail		 Chr2:58992965 Pkp4 within coordinates of
Rr56883 within coordinates of
Tssr17840 1740 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T T T T T T T A T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584935319
MGI SNP Detail		 Chr2:58993067 Pkp4 within coordinates of
Tssr17840 1842 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs578628200
MGI SNP Detail		 Chr2:58993079 Pkp4 within coordinates of
Tssr17840 1854 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C T C C C T C C C C C C C T T
rs582199049
MGI SNP Detail		 Chr2:58993112 Pkp4 within coordinates of
Tssr17840 1887 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C
rs230695794
MGI SNP Detail		 Chr2:58993152 Pkp4 within coordinates of
Tssr17840 1927 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 54 of 54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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