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Mouse SNP Summary
Symbol
Name
ID 		Tssr18871
transcription start site region 18871
MGI:5946638

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260645588
MGI SNP Detail		 Chr2:91031629 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1974 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219666019
MGI SNP Detail		 Chr2:91031645 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1958 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241967032
MGI SNP Detail		 Chr2:91031655 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1948 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs583257395
MGI SNP Detail		 Chr2:91031743 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1860 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265008702
MGI SNP Detail		 Chr2:91031773 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1830 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs226884440
MGI SNP Detail		 Chr2:91031851 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1752 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs240785777
MGI SNP Detail		 Chr2:91031895 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1708 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260148376
MGI SNP Detail		 Chr2:91031968 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1635 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228861881
MGI SNP Detail		 Chr2:91032021 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1582 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260525814
MGI SNP Detail		 Chr2:91032043 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1560 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212129052
MGI SNP Detail		 Chr2:91032104 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1499 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs229300863
MGI SNP Detail		 Chr2:91032159 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1444 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250918546
MGI SNP Detail		 Chr2:91032366 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1237 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs214574000
MGI SNP Detail		 Chr2:91032368 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1235 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27387011
MGI SNP Detail		 Chr2:91032413 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1190 bp upstream
 SNP A/G A A A A A A A A A A A A A G A
rs245161769
MGI SNP Detail		 Chr2:91032456 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1147 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs215769508
MGI SNP Detail		 Chr2:91032495 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1108 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs239484976
MGI SNP Detail		 Chr2:91032507 Gm13783 within coordinates of
Nr1h3 within coordinates of
Tssr18871 1096 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs264192995
MGI SNP Detail		 Chr2:91032573 Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 1030 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27387010
MGI SNP Detail		 Chr2:91032581 Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 1022 bp upstream
 SNP A/T A A A A A A T A A A A A A A A
rs236833636
MGI SNP Detail		 Chr2:91032672 Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 931 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251056942
MGI SNP Detail		 Chr2:91032715 Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 888 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220070206
MGI SNP Detail		 Chr2:91032718 Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 885 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs240258200
MGI SNP Detail		 Chr2:91032720 Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 883 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260210015
MGI SNP Detail		 Chr2:91032785 Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 818 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226492135
MGI SNP Detail		 Chr2:91032866 Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 737 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G C G G G G G G C G G G G G G G G G G G G
rs244217841
MGI SNP Detail		 Chr2:91032942 Cpgi11901 within coordinates of
Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 661 bp upstream
 SNP C/T T C
rs248788193
MGI SNP Detail		 Chr2:91032949 Cpgi11901 within coordinates of
Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 654 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs264748087
MGI SNP Detail		 Chr2:91032955 Cpgi11901 within coordinates of
Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 648 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs228931982
MGI SNP Detail		 Chr2:91033039 Cpgi11901 within coordinates of
Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr560670 within coordinates of
Tssr18871 564 bp upstream
Tssr25175 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs255341465
MGI SNP Detail		 Chr2:91033092 Cpgi11901 within coordinates of
Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr367226 within coordinates of
Rr560670 within coordinates of
Tssr18871 511 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256345728
MGI SNP Detail		 Chr2:91033096 Cpgi11901 within coordinates of
Gm13783 within coordinates of
Nr1h3 within coordinates of
Rr367226 within coordinates of
Rr560670 within coordinates of
Tssr18871 507 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs227003646
MGI SNP Detail		 Chr2:91033132 Cpgi11901 within coordinates of
Nr1h3 within coordinates of
Rr367226 within coordinates of
Rr560671 within coordinates of
Tssr18871 471 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs27387009
MGI SNP Detail		 Chr2:91033244 Acp2 within coordinates of
Cpgi11901 within coordinates of
Rr367226 within coordinates of
Rr560671 within coordinates of
Tssr18871 359 bp upstream
 SNP C/G G G G G G G C G G G G G G G G
rs215838128
MGI SNP Detail		 Chr2:91033407 Acp2 within coordinates of
Cpgi11901 within coordinates of
Tssr18871 196 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241914239
MGI SNP Detail		 Chr2:91033520 Acp2 within coordinates of
Tssr18871 83 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs254726714
MGI SNP Detail		 Chr2:91033870 Acp2 within coordinates of
Tssr18871 258 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212210184
MGI SNP Detail		 Chr2:91033893 Acp2 within coordinates of
Tssr18871 281 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235398181
MGI SNP Detail		 Chr2:91033931 Acp2 within coordinates of
Tssr18871 319 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250928433
MGI SNP Detail		 Chr2:91034072 Acp2 within coordinates of
Tssr18871 460 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs219945616
MGI SNP Detail		 Chr2:91034174 Acp2 within coordinates of
Tssr18871 562 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233644960
MGI SNP Detail		 Chr2:91034205 Acp2 within coordinates of
Tssr18871 593 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253387398
MGI SNP Detail		 Chr2:91034245 Acp2 within coordinates of
Tssr18871 633 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226118584
MGI SNP Detail		 Chr2:91034323 Acp2 within coordinates of
Tssr18871 711 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251734684
MGI SNP Detail		 Chr2:91034324 Acp2 within coordinates of
Tssr18871 712 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261652614
MGI SNP Detail		 Chr2:91034491 Acp2 within coordinates of
Tssr18871 879 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs221569059
MGI SNP Detail		 Chr2:91034537 Acp2 within coordinates of
Tssr18871 925 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs237921773
MGI SNP Detail		 Chr2:91034581 Acp2 within coordinates of
Tssr18871 969 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256420880
MGI SNP Detail		 Chr2:91034596 Acp2 within coordinates of
Tssr18871 984 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226884257
MGI SNP Detail		 Chr2:91034644 Acp2 within coordinates of
Tssr18871 1032 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246172640
MGI SNP Detail		 Chr2:91034694 Acp2 within coordinates of
Tssr18871 1082 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27387008
MGI SNP Detail		 Chr2:91034720 Acp2 within coordinates of
Tssr18871 1108 bp downstream
 SNP A/C A A A A A A C A A A C A A C A
rs233046357
MGI SNP Detail		 Chr2:91035081 Acp2 within coordinates of
Tssr18871 1469 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260032606
MGI SNP Detail		 Chr2:91035095 Acp2 within coordinates of
Tssr18871 1483 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211894920
MGI SNP Detail		 Chr2:91035189 Acp2 within coordinates of
Tssr18871 1577 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27387007
MGI SNP Detail		 Chr2:91035277 Acp2 within coordinates of
Tssr18871 1665 bp downstream
 SNP C/T T T T T T C T C T
rs213646595
MGI SNP Detail		 Chr2:91035284 Acp2 within coordinates of
Tssr18871 1672 bp downstream
 SNP A/G A G
rs586555826
MGI SNP Detail		 Chr2:91035285 Acp2 within coordinates of
Tssr18871 1673 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244955589
MGI SNP Detail		 Chr2:91035296 Acp2 within coordinates of
Tssr18871 1684 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs214120781
MGI SNP Detail		 Chr2:91035375 Acp2 within coordinates of
Tssr18871 1763 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs233444923
MGI SNP Detail		 Chr2:91035535 Acp2 within coordinates of
Tssr18871 1923 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs253443719
MGI SNP Detail		 Chr2:91035562 Acp2 within coordinates of
Tssr18871 1950 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs581295823
MGI SNP Detail		 Chr2:91035595 Acp2 within coordinates of
Tssr18871 1983 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217828821
MGI SNP Detail		 Chr2:91035600 Acp2 within coordinates of
Tssr18871 1988 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
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Showing SNP(s) 1 - 64 of 64
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory