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Mouse SNP Summary
Symbol
Name
ID 		Tssr18941
transcription start site region 18941
MGI:5946708

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Showing SNP(s) 1 - 57 of 57

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs228372647
MGI SNP Detail		 Chr2:92074636 Phf21a within coordinates of
Tssr18941 1916 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27399881
MGI SNP Detail		 Chr2:92074649 Phf21a within coordinates of
Tssr18941 1903 bp upstream
 SNP C/T T T C C T T C T C T C T C C T C C T C
rs261370375
MGI SNP Detail		 Chr2:92074713 Phf21a within coordinates of
Tssr18941 1839 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27399880
MGI SNP Detail		 Chr2:92074722 Phf21a within coordinates of
Tssr18941 1830 bp upstream
 SNP C/T T T T T T T T T T T C T T C T
rs250448529
MGI SNP Detail		 Chr2:92074829 Phf21a within coordinates of
Tssr18941 1723 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265218422
MGI SNP Detail		 Chr2:92074981 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1571 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227072257
MGI SNP Detail		 Chr2:92074988 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1564 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs246946627
MGI SNP Detail		 Chr2:92075073 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1479 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C G C C C C C C G C C C C C C C C C C C C
rs27399879
MGI SNP Detail		 Chr2:92075166 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1386 bp upstream
 SNP A/G A A A A A G A A A A A A A A A
rs27399878
MGI SNP Detail		 Chr2:92075222 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1330 bp upstream
 SNP G/T G G G G G G G G G G T G G T G
rs27399877
MGI SNP Detail		 Chr2:92075248 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1304 bp upstream
 SNP A/G A A G A A G G A G A G A G G A
rs253186626
MGI SNP Detail		 Chr2:92075285 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1267 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213077136
MGI SNP Detail		 Chr2:92075307 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1245 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27399876
MGI SNP Detail		 Chr2:92075349 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1203 bp upstream
 SNP A/T T T T T T T T T T T T T T A T
rs238331517
MGI SNP Detail		 Chr2:92075505 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1047 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258061297
MGI SNP Detail		 Chr2:92075535 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1017 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27399875
MGI SNP Detail		 Chr2:92075596 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 956 bp upstream
 SNP G/T T T T T T T G T T T G T T G T
rs233678417
MGI SNP Detail		 Chr2:92075675 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 877 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27399874
MGI SNP Detail		 Chr2:92075682 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 870 bp upstream
 SNP A/G A A G A A G G A G A G G A G G A A
rs221938939
MGI SNP Detail		 Chr2:92075683 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 869 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27399873
MGI SNP Detail		 Chr2:92075736 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 816 bp upstream
 SNP C/T T T T T T T T T T T C T T C T
rs264616502
MGI SNP Detail		 Chr2:92075765 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 787 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221353420
MGI SNP Detail		 Chr2:92075795 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 757 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs245796611
MGI SNP Detail		 Chr2:92075857 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 695 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262686317
MGI SNP Detail		 Chr2:92075880 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 672 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227128245
MGI SNP Detail		 Chr2:92075895 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 657 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C C C C C
rs27399872
MGI SNP Detail		 Chr2:92075906 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 646 bp upstream
 SNP A/C A A A A A A A A A A C A A C A
rs260339128
MGI SNP Detail		 Chr2:92075992 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 560 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs233399435
MGI SNP Detail		 Chr2:92076075 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 477 bp upstream
 SNP A/T A T
rs249438814
MGI SNP Detail		 Chr2:92076219 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 333 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C C C C C C
rs27399871
MGI SNP Detail		 Chr2:92076247 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 305 bp upstream
 SNP C/G G G C C G G C C G C G C C G C C G C
rs236498622
MGI SNP Detail		 Chr2:92076431 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 121 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256596898
MGI SNP Detail		 Chr2:92076433 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 119 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs27399870
MGI SNP Detail		 Chr2:92076500 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 52 bp upstream
 SNP C/T T T T T T T C T T T T T T T T
rs233689666
MGI SNP Detail		 Chr2:92076543 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 9 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs252688255
MGI SNP Detail		 Chr2:92076924 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 353 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T
rs222737436
MGI SNP Detail		 Chr2:92076928 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 357 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs236310950
MGI SNP Detail		 Chr2:92076929 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 358 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs255498816
MGI SNP Detail		 Chr2:92076944 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 373 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs217582301
MGI SNP Detail		 Chr2:92077142 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 571 bp downstream
 SNP C/T T C
rs239904135
MGI SNP Detail		 Chr2:92077187 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 616 bp downstream
 SNP A/G A G
rs27399869
MGI SNP Detail		 Chr2:92077516 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 945 bp downstream
 SNP C/T C C C C C C T C C C C C C C C
rs220826771
MGI SNP Detail		 Chr2:92077517 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 946 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241049365
MGI SNP Detail		 Chr2:92077524 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 953 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260388672
MGI SNP Detail		 Chr2:92077542 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 971 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C T C C C C C C T C C C C C C C C C C C C
rs108058183
MGI SNP Detail		 Chr2:92077656 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1085 bp downstream
 SNP G/T T G T
rs233586278
MGI SNP Detail		 Chr2:92077736 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1165 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs243597132
MGI SNP Detail		 Chr2:92077790 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1219 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262175765
MGI SNP Detail		 Chr2:92077994 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1423 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs578468336
MGI SNP Detail		 Chr2:92078055 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1484 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27399868
MGI SNP Detail		 Chr2:92078113 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1542 bp downstream
 SNP A/G A A A A A A G A A A G A A G A
rs264439514
MGI SNP Detail		 Chr2:92078142 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1571 bp downstream
 SNP C/G G C
rs218169000
MGI SNP Detail		 Chr2:92078152 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1581 bp downstream
 SNP C/T T C
rs227751609
MGI SNP Detail		 Chr2:92078181 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1610 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246877761
MGI SNP Detail		 Chr2:92078305 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1734 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs217426565
MGI SNP Detail		 Chr2:92078336 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1765 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs234792136
MGI SNP Detail		 Chr2:92078495 Gm74977 within coordinates of
Phf21a within coordinates of
Tssr18941 1924 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 57 of 57
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory