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Mouse SNP Summary
Symbol
Name
ID 		Tssr19262
transcription start site region 19262
MGI:5947029

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Showing SNP(s) 1 - 41 of 41

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs253627848
MGI SNP Detail		 Chr2:105510718 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1821 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217941023
MGI SNP Detail		 Chr2:105510719 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1820 bp upstream
 SNP A/G G G G G G G G G G G A G G G G G G G G G A G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs243077716
MGI SNP Detail		 Chr2:105510722 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1817 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252138943
MGI SNP Detail		 Chr2:105510733 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1806 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217014981
MGI SNP Detail		 Chr2:105510790 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1749 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs581813733
MGI SNP Detail		 Chr2:105510900 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1639 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs585135144
MGI SNP Detail		 Chr2:105510932 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1607 bp upstream
 SNP C/T C C C C C C C C C C C C C T C C T C C C C C C C C C C T C C C C C C T C C C
rs231939445
MGI SNP Detail		 Chr2:105511169 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1370 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs252239880
MGI SNP Detail		 Chr2:105511473 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1066 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs218344151
MGI SNP Detail		 Chr2:105511539 Cpgi12021 within coordinates of
Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1000 bp upstream
 SNP C/T T T T T T T T T T T C T T T T T T T C T C C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs230648058
MGI SNP Detail		 Chr2:105511606 Cpgi12021 within coordinates of
Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 933 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs263822710
MGI SNP Detail		 Chr2:105511678 Cpgi12021 within coordinates of
Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 861 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227148517
MGI SNP Detail		 Chr2:105511722 Cpgi12021 within coordinates of
Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 817 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs248418741
MGI SNP Detail		 Chr2:105511774 Cpgi12021 within coordinates of
Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 765 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs263744711
MGI SNP Detail		 Chr2:105511788 Cpgi12021 within coordinates of
Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 751 bp upstream
 SNP C/G G G G G G G G G G G C C G G G G G G G G G C C G G G G C G G G G G C G G G G G G C G G G G G G G G G G G
rs219620681
MGI SNP Detail		 Chr2:105512052 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 487 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33711680
MGI SNP Detail		 Chr2:105512101 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 438 bp upstream
 SNP A/G A G A G A G G
rs256026827
MGI SNP Detail		 Chr2:105512251 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 288 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223316361
MGI SNP Detail		 Chr2:105512257 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 282 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241770697
MGI SNP Detail		 Chr2:105512268 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 271 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265848860
MGI SNP Detail		 Chr2:105512277 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 262 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs233797199
MGI SNP Detail		 Chr2:105512296 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 243 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs257250652
MGI SNP Detail		 Chr2:105512586 Cpgi12022 within coordinates of
Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 36 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215758205
MGI SNP Detail		 Chr2:105512913 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 363 bp downstream
 SNP A/G G G G G G G G G G G A A G G G G G G G G G A G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs225623039
MGI SNP Detail		 Chr2:105512940 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 390 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245646715
MGI SNP Detail		 Chr2:105513066 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 516 bp downstream
 SNP A/G A A A A A A A A A A G A A A A A A A A A G A A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs46892673
MGI SNP Detail		 Chr2:105513150 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 600 bp downstream
 SNP A/G G A A G A
rs237435440
MGI SNP Detail		 Chr2:105513180 Pax6 within coordinates of
Rr366621 within coordinates of
Rr55347 within coordinates of
Tssr19262 630 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs260300243
MGI SNP Detail		 Chr2:105513270 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 720 bp downstream
 SNP A/G G G G G G G G G G G A G G G G G G G A G A A G G G G A G G G G A G G G G G G A G G G G G G G A G G G G
rs219181275
MGI SNP Detail		 Chr2:105513303 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 753 bp downstream
 SNP A/G G G G G G G G G G G A G G G G G G G A G A A G G G G A G G G G A G G G G G G A G G G G G G G A G G G G
rs238224156
MGI SNP Detail		 Chr2:105513383 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 833 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263574747
MGI SNP Detail		 Chr2:105513610 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1060 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs219722003
MGI SNP Detail		 Chr2:105513686 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1136 bp downstream
 SNP C/T C C C C C C C C C C T T C C C C C C C C C T T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs238633648
MGI SNP Detail		 Chr2:105513722 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1172 bp downstream
 SNP C/T T T T T T T T T T T C C T T T T T T T C T C C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs33369601
MGI SNP Detail		 Chr2:105513766 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1216 bp downstream
 SNP A/T T A A T A
rs217757958
MGI SNP Detail		 Chr2:105513854 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1304 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs244770792
MGI SNP Detail		 Chr2:105513866 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1316 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs582022093
MGI SNP Detail		 Chr2:105513874 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1324 bp downstream
 SNP G/T T T T T T T T T T T G T T T T T T T T T G T T T T T T T T T G T T T T T T T T T T T T T T T T T T
rs50196184
MGI SNP Detail		 Chr2:105514378 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1828 bp downstream
 SNP A/G A G
rs244832304
MGI SNP Detail		 Chr2:105514390 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1840 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs586104532
MGI SNP Detail		 Chr2:105514475 Pax6 within coordinates of
Rr55347 within coordinates of
Tssr19262 1925 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
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Showing SNP(s) 1 - 41 of 41
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory