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Mouse SNP Summary
Symbol
Name
ID 		Tssr20780
transcription start site region 20780
MGI:5948547

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Showing SNP(s) 1 - 38 of 38

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247996505
MGI SNP Detail		 Chr2:152066487 Gm57421 within coordinates of
Rr374080 within coordinates of
Tssr20780 1973 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T T T C T C T C T T C C T C C C C C C
rs223222577
MGI SNP Detail		 Chr2:152066560 Gm57421 within coordinates of
Rr374080 within coordinates of
Tssr20780 1900 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A A A A G A G A G A A G G A G G G G G G
rs245844705
MGI SNP Detail		 Chr2:152066725 Gm57421 within coordinates of
Rr374080 within coordinates of
Tssr20780 1735 bp upstream
 SNP C/T C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs263540946
MGI SNP Detail		 Chr2:152066788 Gm57421 within coordinates of
Rr374080 within coordinates of
Tssr20780 1672 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C C C C T C T C T C C T T C T C T T T T
rs232101270
MGI SNP Detail		 Chr2:152067003 Gm57421 within coordinates of
Rr374080 within coordinates of
Tssr20780 1457 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242783704
MGI SNP Detail		 Chr2:152067080 Gm57421 within coordinates of
Rr374080 within coordinates of
Tssr20780 1380 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs261322438
MGI SNP Detail		 Chr2:152067286 Gm57421 within coordinates of
Rr374080 within coordinates of
Tssr20780 1174 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27385426
MGI SNP Detail		 Chr2:152067414 Gm57421 within coordinates of
Rr374080 within coordinates of
Tssr20780 1046 bp upstream
 SNP A/G G G G G G G A G G G A A A A G
rs244423771
MGI SNP Detail		 Chr2:152067489 Gm57421 within coordinates of
Tssr20780 971 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A A A G A G G G A A G G A G G G G G G
rs49615754
MGI SNP Detail		 Chr2:152067668 Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 792 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C G C C C C C G G G G C G C C C G G C C G C C C C C C
rs579099792
MGI SNP Detail		 Chr2:152067709 Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 751 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231140333
MGI SNP Detail		 Chr2:152067772 Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 688 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255626324
MGI SNP Detail		 Chr2:152067902 Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 558 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217184397
MGI SNP Detail		 Chr2:152068021 Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 439 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G G
rs233184795
MGI SNP Detail		 Chr2:152068146 Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 314 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs247819213
MGI SNP Detail		 Chr2:152068310 Cpgi12441 within coordinates of
Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 150 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216349893
MGI SNP Detail		 Chr2:152068467 Cpgi12441 within coordinates of
Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs230448104
MGI SNP Detail		 Chr2:152068604 Cpgi12441 within coordinates of
Gm57421 within coordinates of
Rr397394 within coordinates of
Rr55821 within coordinates of
Tssr20780 110 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27385425
MGI SNP Detail		 Chr2:152068624 Cpgi12441 within coordinates of
Gm57421 within coordinates of
Rr397394 within coordinates of
Rr55821 within coordinates of
Tssr20780 130 bp downstream
 SNP A/T A A A A A A T A A A T T T T A
rs222893924
MGI SNP Detail		 Chr2:152068637 Cpgi12441 within coordinates of
Gm57421 within coordinates of
Rr397394 within coordinates of
Rr55821 within coordinates of
Tssr20780 143 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236034734
MGI SNP Detail		 Chr2:152068639 Cpgi12441 within coordinates of
Gm57421 within coordinates of
Rr397394 within coordinates of
Rr55821 within coordinates of
Tssr20780 145 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263273635
MGI SNP Detail		 Chr2:152068669 Cpgi12441 within coordinates of
Gm57421 within coordinates of
Rr397394 within coordinates of
Rr55821 within coordinates of
Tssr20780 175 bp downstream
Tssr26784 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs224137804
MGI SNP Detail		 Chr2:152068691 Cpgi12441 within coordinates of
Gm57421 within coordinates of
Rr397394 within coordinates of
Rr55821 within coordinates of
Tssr20780 197 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242721914
MGI SNP Detail		 Chr2:152068755 Cpgi12441 within coordinates of
Gm57421 within coordinates of
Rr397394 within coordinates of
Rr55821 within coordinates of
Tssr20780 261 bp downstream
Tssr20781 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T T T T G T G T G T T G G T G G G G G G
rs260639065
MGI SNP Detail		 Chr2:152069086 Cpgi12441 within coordinates of
Csnk2a1 within coordinates of
Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 592 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222722713
MGI SNP Detail		 Chr2:152069254 Cpgi12441 within coordinates of
Csnk2a1 within coordinates of
Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 760 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs238156215
MGI SNP Detail		 Chr2:152069308 Cpgi12441 within coordinates of
Csnk2a1 within coordinates of
Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 814 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261605403
MGI SNP Detail		 Chr2:152069412 Cpgi12441 within coordinates of
Csnk2a1 within coordinates of
Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 918 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs231387202
MGI SNP Detail		 Chr2:152069416 Cpgi12441 within coordinates of
Csnk2a1 within coordinates of
Gm57421 within coordinates of
Rr55821 within coordinates of
Tssr20780 922 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs250922705
MGI SNP Detail		 Chr2:152069727 Csnk2a1 within coordinates of
Rr55821 within coordinates of
Tssr20780 1233 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265782669
MGI SNP Detail		 Chr2:152069740 Csnk2a1 within coordinates of
Rr55821 within coordinates of
Tssr20780 1246 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227115750
MGI SNP Detail		 Chr2:152069818 Csnk2a1 within coordinates of
Rr55821 within coordinates of
Tssr20780 1324 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs247772228
MGI SNP Detail		 Chr2:152069866 Csnk2a1 within coordinates of
Rr55821 within coordinates of
Tssr20780 1372 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217024995
MGI SNP Detail		 Chr2:152070090 Csnk2a1 within coordinates of
Rr55821 within coordinates of
Tssr20780 1596 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230392487
MGI SNP Detail		 Chr2:152070108 Csnk2a1 within coordinates of
Rr55821 within coordinates of
Tssr20780 1614 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs582241100
MGI SNP Detail		 Chr2:152070219 Csnk2a1 within coordinates of
Rr55821 within coordinates of
Tssr20780 1725 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs252026556
MGI SNP Detail		 Chr2:152070307 Csnk2a1 within coordinates of
Rr55821 within coordinates of
Tssr20780 1813 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs27385424
MGI SNP Detail		 Chr2:152070448 Csnk2a1 within coordinates of
Rr55821 within coordinates of
Tssr20780 1954 bp downstream
 SNP A/G G G G G G G G G G A A A G
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Showing SNP(s) 1 - 38 of 38
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory