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Mouse SNP Summary
Symbol
Name
ID 		Tssr21078
transcription start site region 21078
MGI:5948845

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29520387
MGI SNP Detail		 Chr2:155116587 Gm75512 within coordinates of
Tssr21078 1929 bp upstream
 SNP C/T T C C C T
rs219428445
MGI SNP Detail		 Chr2:155116611 Gm75512 within coordinates of
Tssr21078 1905 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33120826
MGI SNP Detail		 Chr2:155116645 Gm75512 within coordinates of
Tssr21078 1871 bp upstream
 SNP C/T C T T T C
rs254644162
MGI SNP Detail		 Chr2:155116652 Gm75512 within coordinates of
Tssr21078 1864 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs579010526
MGI SNP Detail		 Chr2:155116720 Gm75512 within coordinates of
Tssr21078 1796 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212416550
MGI SNP Detail		 Chr2:155116767 Gm75512 within coordinates of
Tssr21078 1749 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs232963491
MGI SNP Detail		 Chr2:155116906 Gm75512 within coordinates of
Tssr21078 1610 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs251248999
MGI SNP Detail		 Chr2:155116975 Gm75512 within coordinates of
Tssr21078 1541 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs49941193
MGI SNP Detail		 Chr2:155116980 Gm75512 within coordinates of
Tssr21078 1536 bp upstream
 SNP G/T T T G
rs234137942
MGI SNP Detail		 Chr2:155116985 Gm75512 within coordinates of
Tssr21078 1531 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs260815144
MGI SNP Detail		 Chr2:155116991 Gm75512 within coordinates of
Tssr21078 1525 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs226013072
MGI SNP Detail		 Chr2:155116993 Gm75512 within coordinates of
Tssr21078 1523 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242013291
MGI SNP Detail		 Chr2:155117060 Gm75512 within coordinates of
Tssr21078 1456 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs264648644
MGI SNP Detail		 Chr2:155117116 Gm75512 within coordinates of
Tssr21078 1400 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219990190
MGI SNP Detail		 Chr2:155117138 Gm75512 within coordinates of
Tssr21078 1378 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47311213
MGI SNP Detail		 Chr2:155117139 Gm75512 within coordinates of
Tssr21078 1377 bp upstream
 SNP A/G G G A
rs257748109
MGI SNP Detail		 Chr2:155117285 Gm75512 within coordinates of
Tssr21078 1231 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs226671343
MGI SNP Detail		 Chr2:155117286 Gm75512 within coordinates of
Tssr21078 1230 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259880401
MGI SNP Detail		 Chr2:155117317 Gm75512 within coordinates of
Tssr21078 1199 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs264574383
MGI SNP Detail		 Chr2:155117353 Gm75512 within coordinates of
Tssr21078 1163 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234417376
MGI SNP Detail		 Chr2:155117557 Gm75512 within coordinates of
Tssr21078 959 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs250134296
MGI SNP Detail		 Chr2:155117688 Gm75512 within coordinates of
Tssr21078 828 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs245764594
MGI SNP Detail		 Chr2:155117741 Gm75512 within coordinates of
Tssr21078 775 bp upstream
 SNP C/T C T
rs233269693
MGI SNP Detail		 Chr2:155117745 Gm75512 within coordinates of
Tssr21078 771 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245100809
MGI SNP Detail		 Chr2:155117755 Gm75512 within coordinates of
Tssr21078 761 bp upstream
 SNP A/C/T C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs215973032
MGI SNP Detail		 Chr2:155117761 Gm75512 within coordinates of
Tssr21078 755 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs586061754
MGI SNP Detail		 Chr2:155117773 Gm75512 within coordinates of
Tssr21078 743 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs214047413
MGI SNP Detail		 Chr2:155117804 Gm75512 within coordinates of
Tssr21078 712 bp upstream
 SNP C/T C T
rs229417011
MGI SNP Detail		 Chr2:155117881 Gm75512 within coordinates of
Tssr21078 635 bp upstream
 SNP A/G G A
rs225905527
MGI SNP Detail		 Chr2:155118018 Cpgi12515 within coordinates of
Gm75512 within coordinates of
Tssr21078 498 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs237122406
MGI SNP Detail		 Chr2:155118032 Cpgi12515 within coordinates of
Gm75512 within coordinates of
Tssr21078 484 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs255335178
MGI SNP Detail		 Chr2:155118094 Cpgi12515 within coordinates of
Gm75512 within coordinates of
Tssr21078 422 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs249065556
MGI SNP Detail		 Chr2:155118102 Cpgi12515 within coordinates of
Gm75512 within coordinates of
Tssr21078 414 bp upstream
 SNP C/T T C
rs237546819
MGI SNP Detail		 Chr2:155118114 Cpgi12515 within coordinates of
Gm75512 within coordinates of
Tssr21078 402 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218921213
MGI SNP Detail		 Chr2:155118125 Cpgi12515 within coordinates of
Gm75512 within coordinates of
Tssr21078 391 bp upstream
 SNP A/C C A
rs220440499
MGI SNP Detail		 Chr2:155118188 Cpgi12515 within coordinates of
Gm75512 within coordinates of
Tssr21078 328 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs248020362
MGI SNP Detail		 Chr2:155118752 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 218 bp downstream
 SNP A/G A G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G
rs265869360
MGI SNP Detail		 Chr2:155118833 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 299 bp downstream
Tssr21081 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228393284
MGI SNP Detail		 Chr2:155118874 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 340 bp downstream
Tssr21083 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs234327424
MGI SNP Detail		 Chr2:155118984 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 450 bp downstream
 SNP C/T T C
rs256272806
MGI SNP Detail		 Chr2:155118993 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 459 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G C G G G G G G G G G G G
rs226980466
MGI SNP Detail		 Chr2:155119005 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 471 bp downstream
Tssr21085 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245327280
MGI SNP Detail		 Chr2:155119176 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 642 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs216261297
MGI SNP Detail		 Chr2:155119242 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 708 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232242213
MGI SNP Detail		 Chr2:155119279 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 745 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs251920446
MGI SNP Detail		 Chr2:155119317 Cpgi12515 within coordinates of
Map1lc3a within coordinates of
Tssr21078 783 bp downstream
 SNP C/T T C
rs218324414
MGI SNP Detail		 Chr2:155119485 Map1lc3a within coordinates of
Tssr21078 951 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235583560
MGI SNP Detail		 Chr2:155119586 Map1lc3a within coordinates of
Tssr21078 1052 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs248101098
MGI SNP Detail		 Chr2:155119722 Map1lc3a within coordinates of
Tssr21078 1188 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs214264456
MGI SNP Detail		 Chr2:155119844 Map1lc3a within coordinates of
Tssr21078 1310 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs231422654
MGI SNP Detail		 Chr2:155119929 Map1lc3a within coordinates of
Tssr21078 1395 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251942493
MGI SNP Detail		 Chr2:155120067 Tssr21078 1533 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs579666311
MGI SNP Detail		 Chr2:155120153 Tssr21078 1619 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224160476
MGI SNP Detail		 Chr2:155120306 Pigu within coordinates of
Tssr21078 1772 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
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Showing SNP(s) 1 - 54 of 54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory