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Mouse SNP Summary
Symbol
Name
ID 		Tssr21225
transcription start site region 21225
MGI:5948992

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Showing SNP(s) 1 - 72 of 72

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252418344
MGI SNP Detail		 Chr2:156975866 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1855 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs212042056
MGI SNP Detail		 Chr2:156975886 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1835 bp upstream
 SNP C/G C G
rs240228958
MGI SNP Detail		 Chr2:156975891 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1830 bp upstream
Tssr27158 within coordinates of
 SNP C/T T C
rs249056530
MGI SNP Detail		 Chr2:156975911 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1810 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs212485489
MGI SNP Detail		 Chr2:156975917 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1804 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231111772
MGI SNP Detail		 Chr2:156975924 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1797 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs250136109
MGI SNP Detail		 Chr2:156975946 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1775 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254139564
MGI SNP Detail		 Chr2:156975978 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1743 bp upstream
 SNP C/T C T
rs581929833
MGI SNP Detail		 Chr2:156976207 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1514 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238837369
MGI SNP Detail		 Chr2:156976244 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1477 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258382509
MGI SNP Detail		 Chr2:156976251 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1470 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs225045588
MGI SNP Detail		 Chr2:156976325 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1396 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs247362839
MGI SNP Detail		 Chr2:156976414 Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1307 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253071659
MGI SNP Detail		 Chr2:156976488 Cpgi12569 within coordinates of
Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1233 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217971729
MGI SNP Detail		 Chr2:156976542 Cpgi12569 within coordinates of
Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1179 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33757418
MGI SNP Detail		 Chr2:156976605 Cpgi12569 within coordinates of
Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1116 bp upstream
 SNP A/G A A A G G A
rs29871373
MGI SNP Detail		 Chr2:156976685 Cpgi12569 within coordinates of
Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 1036 bp upstream
 SNP C/T C C C T
rs223456515
MGI SNP Detail		 Chr2:156976741 Cpgi12569 within coordinates of
Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 980 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248013841
MGI SNP Detail		 Chr2:156976887 Cpgi12569 within coordinates of
Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 834 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263743501
MGI SNP Detail		 Chr2:156976914 Cpgi12569 within coordinates of
Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 807 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs234280633
MGI SNP Detail		 Chr2:156976947 Cpgi12569 within coordinates of
Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 774 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249086099
MGI SNP Detail		 Chr2:156977002 Cpgi12569 within coordinates of
Rr397438 within coordinates of
Rr55957 within coordinates of
Samhd1 within coordinates of
Tssr21225 719 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256260995
MGI SNP Detail		 Chr2:156977140 Cpgi12569 within coordinates of
Rr397438 within coordinates of
Rr55957 within coordinates of
Tssr21225 581 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225354291
MGI SNP Detail		 Chr2:156977141 Cpgi12569 within coordinates of
Rr397438 within coordinates of
Rr55957 within coordinates of
Tssr21225 580 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245315548
MGI SNP Detail		 Chr2:156977170 Cpgi12569 within coordinates of
Rr397438 within coordinates of
Rr55957 within coordinates of
Tssr21225 551 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213823199
MGI SNP Detail		 Chr2:156977172 Cpgi12569 within coordinates of
Rr397438 within coordinates of
Rr55957 within coordinates of
Tssr21225 549 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233624702
MGI SNP Detail		 Chr2:156977215 Cpgi12569 within coordinates of
Rr397438 within coordinates of
Rr55957 within coordinates of
Tssr21225 506 bp upstream
 SNP A/G A G
rs256832344
MGI SNP Detail		 Chr2:156977217 Cpgi12569 within coordinates of
Rr397438 within coordinates of
Rr55957 within coordinates of
Tssr21225 504 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251627057
MGI SNP Detail		 Chr2:156977259 Cpgi12569 within coordinates of
Rr397438 within coordinates of
Rr55957 within coordinates of
Tssr21225 462 bp upstream
 SNP C/T C T
rs234065958
MGI SNP Detail		 Chr2:156977372 Cpgi12569 within coordinates of
Rr55957 within coordinates of
Tssr21225 349 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253097809
MGI SNP Detail		 Chr2:156977433 Rr55957 within coordinates of
Tssr21225 288 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217827862
MGI SNP Detail		 Chr2:156977608 Tssr21225 113 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs230711934
MGI SNP Detail		 Chr2:156977621 Tssr21225 100 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219308504
MGI SNP Detail		 Chr2:156977668 Tssr21225 53 bp upstream
 SNP A/G A G
rs585498527
MGI SNP Detail		 Chr2:156977726 Tssr21225 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs49981825
MGI SNP Detail		 Chr2:156977735 Tssr21225 9 bp downstream
 SNP A/T A T
rs245409696
MGI SNP Detail		 Chr2:156977754 Tssr21225 28 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs265729374
MGI SNP Detail		 Chr2:156977785 Tssr21225 59 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225985914
MGI SNP Detail		 Chr2:156977854 Tssr21225 128 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242908056
MGI SNP Detail		 Chr2:156977888 Tssr21225 162 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256295372
MGI SNP Detail		 Chr2:156977890 Tssr21225 164 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs225195581
MGI SNP Detail		 Chr2:156977949 Tssr21225 223 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245348273
MGI SNP Detail		 Chr2:156978058 Tssr21225 332 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs262984946
MGI SNP Detail		 Chr2:156978061 Tssr21225 335 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232566176
MGI SNP Detail		 Chr2:156978067 Tssr21225 341 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs251987649
MGI SNP Detail		 Chr2:156978220 Tssr21225 494 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs216746857
MGI SNP Detail		 Chr2:156978361 Tssr21225 635 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs27308020
MGI SNP Detail		 Chr2:156978496 Tssr21225 770 bp downstream
 SNP C/G C G G G G C C
rs27308019
MGI SNP Detail		 Chr2:156978517 Tssr21225 791 bp downstream
 SNP A/G A A G G G G A A
rs211944841
MGI SNP Detail		 Chr2:156978673 Tssr21225 947 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230637426
MGI SNP Detail		 Chr2:156978721 Tssr21225 995 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261940189
MGI SNP Detail		 Chr2:156978750 Tssr21225 1024 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs223428079
MGI SNP Detail		 Chr2:156978770 Tssr21225 1044 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239911526
MGI SNP Detail		 Chr2:156978933 Tssr21225 1207 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259560672
MGI SNP Detail		 Chr2:156978967 Tssr21225 1241 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs222715290
MGI SNP Detail		 Chr2:156978970 Tssr21225 1244 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs27308018
MGI SNP Detail		 Chr2:156979057 Tssr21225 1331 bp downstream
 SNP A/G G G G A G A A A G G
rs27308017
MGI SNP Detail		 Chr2:156979079 Tssr21225 1353 bp downstream
 SNP A/T A A A T A T T T A A
rs219017060
MGI SNP Detail		 Chr2:156979110 Tssr21225 1384 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579472124
MGI SNP Detail		 Chr2:156979239 Tssr21225 1513 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239219489
MGI SNP Detail		 Chr2:156979247 Tssr21225 1521 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs265357269
MGI SNP Detail		 Chr2:156979252 Tssr21225 1526 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs232016135
MGI SNP Detail		 Chr2:156979272 Tssr21225 1546 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs583098716
MGI SNP Detail		 Chr2:156979290 Tssr21225 1564 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587483973
MGI SNP Detail		 Chr2:156979337 Tssr21225 1611 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580509344
MGI SNP Detail		 Chr2:156979338 Tssr21225 1612 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33665521
MGI SNP Detail		 Chr2:156979351 Tssr21225 1625 bp downstream
 SNP A/G A A A G
rs263414097
MGI SNP Detail		 Chr2:156979423 Tssr21225 1697 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227954272
MGI SNP Detail		 Chr2:156979510 Tssr21225 1784 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247129387
MGI SNP Detail		 Chr2:156979689 Tssr21225 1963 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs211883185
MGI SNP Detail		 Chr2:156979691 Tssr21225 1965 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224075371
MGI SNP Detail		 Chr2:156979692 Tssr21225 1966 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 72 of 72
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory