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Mouse SNP Summary
Symbol
Name
ID 		Tssr21417
transcription start site region 21417
MGI:5949184

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256028117
MGI SNP Detail		 Chr2:162501122 Ptprt within coordinates of
Tssr21417 1990 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs226657649
MGI SNP Detail		 Chr2:162501273 Ptprt within coordinates of
Tssr21417 1839 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs245798319
MGI SNP Detail		 Chr2:162501288 Ptprt within coordinates of
Tssr21417 1824 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216154071
MGI SNP Detail		 Chr2:162501329 Ptprt within coordinates of
Tssr21417 1783 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs583956365
MGI SNP Detail		 Chr2:162501383 Ptprt within coordinates of
Tssr21417 1729 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587564908
MGI SNP Detail		 Chr2:162501404 Ptprt within coordinates of
Tssr21417 1708 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs239782388
MGI SNP Detail		 Chr2:162501495 Ptprt within coordinates of
Tssr21417 1617 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs260513277
MGI SNP Detail		 Chr2:162501513 Ptprt within coordinates of
Tssr21417 1599 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs212443357
MGI SNP Detail		 Chr2:162501557 Ptprt within coordinates of
Tssr21417 1555 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs33443271
MGI SNP Detail		 Chr2:162501692 Ptprt within coordinates of
Tssr21417 1420 bp upstream
 SNP C/T C C T T C C T
rs251314224
MGI SNP Detail		 Chr2:162501704 Ptprt within coordinates of
Tssr21417 1408 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs214543836
MGI SNP Detail		 Chr2:162501760 Ptprt within coordinates of
Tssr21417 1352 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs33150497
MGI SNP Detail		 Chr2:162501788 Ptprt within coordinates of
Tssr21417 1324 bp upstream
 SNP A/C A A C C A
rs579458068
MGI SNP Detail		 Chr2:162501806 Ptprt within coordinates of
Tssr21417 1306 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234108571
MGI SNP Detail		 Chr2:162501956 Ptprt within coordinates of
Tssr21417 1156 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs253779107
MGI SNP Detail		 Chr2:162502017 Ptprt within coordinates of
Tssr21417 1095 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs225994027
MGI SNP Detail		 Chr2:162502216 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 896 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs248255562
MGI SNP Detail		 Chr2:162502220 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 892 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs260866039
MGI SNP Detail		 Chr2:162502233 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 879 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221546781
MGI SNP Detail		 Chr2:162502423 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 689 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237160183
MGI SNP Detail		 Chr2:162502489 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 623 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs587010992
MGI SNP Detail		 Chr2:162502524 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 588 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs255893336
MGI SNP Detail		 Chr2:162502575 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 537 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226550734
MGI SNP Detail		 Chr2:162502588 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 524 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs239756712
MGI SNP Detail		 Chr2:162502603 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 509 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G G G G G C G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263910622
MGI SNP Detail		 Chr2:162502608 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 504 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234410215
MGI SNP Detail		 Chr2:162502650 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 462 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs255014109
MGI SNP Detail		 Chr2:162502688 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 424 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs212697990
MGI SNP Detail		 Chr2:162502707 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 405 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229340685
MGI SNP Detail		 Chr2:162502803 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 309 bp upstream
 SNP C/G G C C G C C C C C G C C G C G G G G G C G G G G C C C C C G G C C C G C C C G C G C
rs245363576
MGI SNP Detail		 Chr2:162502829 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 283 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214435035
MGI SNP Detail		 Chr2:162502908 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 204 bp upstream
 SNP A/T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T
rs224109094
MGI SNP Detail		 Chr2:162502936 Cpgi12617 within coordinates of
Ptprt within coordinates of
Tssr21417 176 bp upstream
 SNP G/T T G G T G G G G T G G G G T G T T G T G G G G T G G G T G G T G
rs234021297
MGI SNP Detail		 Chr2:162503423 9430021M05Rik within coordinates of
Cpgi12617 within coordinates of
Tssr21417 264 bp downstream
 SNP C/G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs253725160
MGI SNP Detail		 Chr2:162503482 9430021M05Rik within coordinates of
Cpgi12617 within coordinates of
Tssr21417 323 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs218337440
MGI SNP Detail		 Chr2:162503532 9430021M05Rik within coordinates of
Cpgi12617 within coordinates of
Tssr21417 373 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs242888134
MGI SNP Detail		 Chr2:162503539 9430021M05Rik within coordinates of
Cpgi12617 within coordinates of
Tssr21417 380 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs255410926
MGI SNP Detail		 Chr2:162503578 9430021M05Rik within coordinates of
Cpgi12617 within coordinates of
Tssr21417 419 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs220943399
MGI SNP Detail		 Chr2:162503579 9430021M05Rik within coordinates of
Cpgi12617 within coordinates of
Tssr21417 420 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237508368
MGI SNP Detail		 Chr2:162503594 9430021M05Rik within coordinates of
Cpgi12617 within coordinates of
Tssr21417 435 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs250470735
MGI SNP Detail		 Chr2:162503646 9430021M05Rik within coordinates of
Tssr21417 487 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29518313
MGI SNP Detail		 Chr2:162503688 9430021M05Rik within coordinates of
Tssr21417 529 bp downstream
 SNP A/T A A T T A T
rs239745872
MGI SNP Detail		 Chr2:162503819 9430021M05Rik within coordinates of
Tssr21417 660 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241831908
MGI SNP Detail		 Chr2:162503842 9430021M05Rik within coordinates of
Tssr21417 683 bp downstream
 SNP A/G A G
rs32931458
MGI SNP Detail		 Chr2:162504011 9430021M05Rik within coordinates of
Tssr21417 852 bp downstream
 SNP C/T C C T T C C T
rs251714381
MGI SNP Detail		 Chr2:162504033 9430021M05Rik within coordinates of
Tssr21417 874 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261662984
MGI SNP Detail		 Chr2:162504057 9430021M05Rik within coordinates of
Tssr21417 898 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225248539
MGI SNP Detail		 Chr2:162504059 9430021M05Rik within coordinates of
Tssr21417 900 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs245308136
MGI SNP Detail		 Chr2:162504066 9430021M05Rik within coordinates of
Tssr21417 907 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214762440
MGI SNP Detail		 Chr2:162504108 9430021M05Rik within coordinates of
Tssr21417 949 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227406185
MGI SNP Detail		 Chr2:162504215 9430021M05Rik within coordinates of
Tssr21417 1056 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253275450
MGI SNP Detail		 Chr2:162504306 9430021M05Rik within coordinates of
Tssr21417 1147 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs218299938
MGI SNP Detail		 Chr2:162504347 9430021M05Rik within coordinates of
Tssr21417 1188 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29518087
MGI SNP Detail		 Chr2:162504470 9430021M05Rik within coordinates of
Tssr21417 1311 bp downstream
 SNP C/T T T C C T
rs246446456
MGI SNP Detail		 Chr2:162504503 9430021M05Rik within coordinates of
Tssr21417 1344 bp downstream
 SNP A/G A G
rs252993266
MGI SNP Detail		 Chr2:162504530 9430021M05Rik within coordinates of
Tssr21417 1371 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs212662146
MGI SNP Detail		 Chr2:162504541 9430021M05Rik within coordinates of
Tssr21417 1382 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T T
rs231314290
MGI SNP Detail		 Chr2:162504569 9430021M05Rik within coordinates of
Tssr21417 1410 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs250460047
MGI SNP Detail		 Chr2:162504667 9430021M05Rik within coordinates of
Tssr21417 1508 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T C T T T T T T T T T T T T
rs262198426
MGI SNP Detail		 Chr2:162504691 9430021M05Rik within coordinates of
Tssr21417 1532 bp downstream
 SNP C/T C T
rs233270910
MGI SNP Detail		 Chr2:162504709 9430021M05Rik within coordinates of
Tssr21417 1550 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51822201
MGI SNP Detail		 Chr2:162504739 9430021M05Rik within coordinates of
Tssr21417 1580 bp downstream
 SNP A/G A G G A
rs51000888
MGI SNP Detail		 Chr2:162504879 9430021M05Rik within coordinates of
Tssr21417 1720 bp downstream
 SNP C/T C T
rs240871368
MGI SNP Detail		 Chr2:162504901 9430021M05Rik within coordinates of
Tssr21417 1742 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs264804946
MGI SNP Detail		 Chr2:162504928 9430021M05Rik within coordinates of
Tssr21417 1769 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs219068993
MGI SNP Detail		 Chr2:162504937 9430021M05Rik within coordinates of
Tssr21417 1778 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs239225053
MGI SNP Detail		 Chr2:162504944 9430021M05Rik within coordinates of
Tssr21417 1785 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs33693015
MGI SNP Detail		 Chr2:162504964 9430021M05Rik within coordinates of
Tssr21417 1805 bp downstream
 SNP A/G G G A G G A
rs227758193
MGI SNP Detail		 Chr2:162505021 9430021M05Rik within coordinates of
Tssr21417 1862 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs258757357
MGI SNP Detail		 Chr2:162505022 9430021M05Rik within coordinates of
Tssr21417 1863 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs264042566
MGI SNP Detail		 Chr2:162505131 9430021M05Rik within coordinates of
Tssr21417 1972 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
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Showing SNP(s) 1 - 71 of 71
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory