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Mouse SNP Summary
Symbol
Name
ID 		Tssr23834
transcription start site region 23834
MGI:5951601

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Showing SNP(s) 1 - 48 of 48

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27144554
MGI SNP Detail		 Chr2:38814470 Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 1938 bp downstream
 SNP C/T T T T T T T T T T T T T T C T
rs217919828
MGI SNP Detail		 Chr2:38814484 Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 1924 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27144553
MGI SNP Detail		 Chr2:38814531 Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 1877 bp downstream
 SNP C/T T T T T T T C T T T T T T C T
rs263866555
MGI SNP Detail		 Chr2:38814534 Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 1874 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs234733466
MGI SNP Detail		 Chr2:38814601 Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 1807 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27144552
MGI SNP Detail		 Chr2:38814632 Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 1776 bp downstream
 SNP C/G C C C C G C C C C C C C C C C C C G
rs265790909
MGI SNP Detail		 Chr2:38814779 Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 1629 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs226011987
MGI SNP Detail		 Chr2:38814926 Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 1482 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245958267
MGI SNP Detail		 Chr2:38815490 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 918 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs212493516
MGI SNP Detail		 Chr2:38815510 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 898 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231125572
MGI SNP Detail		 Chr2:38815542 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 866 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs259267747
MGI SNP Detail		 Chr2:38815653 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 755 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T T T T T T T T A T T T T T T A T T T T
rs219232146
MGI SNP Detail		 Chr2:38815669 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 739 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs240215936
MGI SNP Detail		 Chr2:38815772 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 636 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259605227
MGI SNP Detail		 Chr2:38815787 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 621 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219506865
MGI SNP Detail		 Chr2:38815798 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 610 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231336062
MGI SNP Detail		 Chr2:38815823 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 585 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250362827
MGI SNP Detail		 Chr2:38815839 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 569 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs217977916
MGI SNP Detail		 Chr2:38815875 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 533 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236627179
MGI SNP Detail		 Chr2:38815989 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 419 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G C G G G G
rs237074958
MGI SNP Detail		 Chr2:38816172 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 236 bp downstream
 SNP A/C A C
rs265838928
MGI SNP Detail		 Chr2:38816302 Cpgi11616 within coordinates of
Nr6a1 within coordinates of
Rr56789 within coordinates of
Tssr23834 106 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs226265549
MGI SNP Detail		 Chr2:38816552 Cpgi11616 within coordinates of
Rr396935 within coordinates of
Rr56789 within coordinates of
Tssr23834 86 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs27144551
MGI SNP Detail		 Chr2:38816564 Cpgi11616 within coordinates of
Rr396935 within coordinates of
Rr56789 within coordinates of
Tssr23834 98 bp upstream
 SNP C/G G C G G G G C C
rs247547191
MGI SNP Detail		 Chr2:38816851 Rr56789 within coordinates of
Tssr23834 385 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263471386
MGI SNP Detail		 Chr2:38817003 Rr56789 within coordinates of
Tssr23834 537 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs225514629
MGI SNP Detail		 Chr2:38817062 Rr56789 within coordinates of
Tssr23834 596 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs240038102
MGI SNP Detail		 Chr2:38817106 Rr56789 within coordinates of
Tssr23834 640 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
rs256246675
MGI SNP Detail		 Chr2:38817116 Rr56789 within coordinates of
Tssr23834 650 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27144550
MGI SNP Detail		 Chr2:38817169 Rr56789 within coordinates of
Tssr23834 703 bp upstream
 SNP C/T C C C C C C C C C T C
rs254259056
MGI SNP Detail		 Chr2:38817248 Rr56789 within coordinates of
Tssr23834 782 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs219203455
MGI SNP Detail		 Chr2:38817255 Rr56789 within coordinates of
Tssr23834 789 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs578717445
MGI SNP Detail		 Chr2:38817328 Rr56789 within coordinates of
Tssr23834 862 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231754648
MGI SNP Detail		 Chr2:38817350 Rr56789 within coordinates of
Tssr23834 884 bp upstream
 SNP C/T T T T T T T T T T C T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs581996616
MGI SNP Detail		 Chr2:38817479 Rr56789 within coordinates of
Tssr23834 1013 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs258317372
MGI SNP Detail		 Chr2:38817591 Rr56789 within coordinates of
Tssr23834 1125 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213857975
MGI SNP Detail		 Chr2:38817647 Tssr23834 1181 bp upstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232279675
MGI SNP Detail		 Chr2:38817732 Tssr23834 1266 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A
rs250379201
MGI SNP Detail		 Chr2:38817838 Tssr23834 1372 bp upstream
 SNP A/C/T A A A A A A A A A A A A A A A A A A A T A A C A A A A C A A A A A A A A A A A A C A A A A A A A C A A A A
rs211892514
MGI SNP Detail		 Chr2:38817844 Tssr23834 1378 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237271867
MGI SNP Detail		 Chr2:38817955 Tssr23834 1489 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260203384
MGI SNP Detail		 Chr2:38818147 Tssr23834 1681 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs227101161
MGI SNP Detail		 Chr2:38818157 Tssr23834 1691 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244822110
MGI SNP Detail		 Chr2:38818312 Gm75760 within coordinates of
Rr43350 within coordinates of
Tssr23834 1846 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253300900
MGI SNP Detail		 Chr2:38818365 Gm75760 within coordinates of
Rr43350 within coordinates of
Tssr23834 1899 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs219380194
MGI SNP Detail		 Chr2:38818385 Gm75760 within coordinates of
Rr43350 within coordinates of
Tssr23834 1919 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C
rs27144549
MGI SNP Detail		 Chr2:38818416 Gm75760 within coordinates of
Tssr23834 1950 bp upstream
 SNP C/T T T T T T T C T T C T
rs256307711
MGI SNP Detail		 Chr2:38818454 Gm75760 within coordinates of
Tssr23834 1988 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 48 of 48
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory