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Mouse SNP Summary
Symbol
Name
ID 		Tssr24628
transcription start site region 24628
MGI:5952395

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs265511919
MGI SNP Detail		 Chr2:74544530 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1951 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs228146227
MGI SNP Detail		 Chr2:74544531 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1950 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245315191
MGI SNP Detail		 Chr2:74544602 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1879 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258673995
MGI SNP Detail		 Chr2:74544659 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1822 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T C T T T C T T T T T T T C T T T T
rs224593787
MGI SNP Detail		 Chr2:74544835 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1646 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254530237
MGI SNP Detail		 Chr2:74544884 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1597 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs218491875
MGI SNP Detail		 Chr2:74545090 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1391 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242735851
MGI SNP Detail		 Chr2:74545126 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1355 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs27967858
MGI SNP Detail		 Chr2:74545225 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1256 bp downstream
 SNP A/G A A A A A A A A G A A G A
rs215600078
MGI SNP Detail		 Chr2:74545252 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1229 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C G C C C G C C C C C C C G C C C C
rs231119569
MGI SNP Detail		 Chr2:74545253 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1228 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs250199263
MGI SNP Detail		 Chr2:74545254 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1227 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217942152
MGI SNP Detail		 Chr2:74545274 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1207 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27967857
MGI SNP Detail		 Chr2:74545309 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1172 bp downstream
 SNP A/G G G G G G G G G G A G G A G
rs263677739
MGI SNP Detail		 Chr2:74545407 Cpgi11802 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1074 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs27967856
MGI SNP Detail		 Chr2:74545421 Cpgi11802 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1060 bp downstream
 SNP C/G C C C C C C C C G C C G C
rs251578756
MGI SNP Detail		 Chr2:74545444 Cpgi11802 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1037 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259308717
MGI SNP Detail		 Chr2:74545463 Cpgi11802 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1018 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs222077643
MGI SNP Detail		 Chr2:74545470 Cpgi11802 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1011 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs238926321
MGI SNP Detail		 Chr2:74545523 Cpgi11802 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 958 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs33761389
MGI SNP Detail		 Chr2:74545524 Cpgi11802 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 957 bp downstream
 SNP C/T C C C T C C C
rs224564998
MGI SNP Detail		 Chr2:74545557 Cpgi11802 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 924 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs250275255
MGI SNP Detail		 Chr2:74545569 Cpgi11802 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 912 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs265984797
MGI SNP Detail		 Chr2:74545597 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 884 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs234148322
MGI SNP Detail		 Chr2:74545664 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 817 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257645987
MGI SNP Detail		 Chr2:74545682 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 799 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A T A A A T A A A A A A A A A A A A
rs215692107
MGI SNP Detail		 Chr2:74545876 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 605 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs225094950
MGI SNP Detail		 Chr2:74545925 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 556 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs244268187
MGI SNP Detail		 Chr2:74546177 Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr44608 within coordinates of
Rr57045 within coordinates of
Tssr24628 304 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs211756395
MGI SNP Detail		 Chr2:74546214 Cpgi11803 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 267 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27967855
MGI SNP Detail		 Chr2:74546231 Cpgi11803 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 250 bp downstream
 SNP A/G G G G G G G G G G A G G A G
rs27967854
MGI SNP Detail		 Chr2:74546249 Cpgi11803 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 232 bp downstream
 SNP C/T T T T T T T T T T C T T C T
rs218895470
MGI SNP Detail		 Chr2:74546259 Cpgi11803 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 222 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs237734971
MGI SNP Detail		 Chr2:74546319 Cpgi11803 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 162 bp downstream
Tssr533 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T
rs253517379
MGI SNP Detail		 Chr2:74546365 Cpgi11803 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24626 within coordinates of
Tssr24628 116 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T C T T T T
rs222042439
MGI SNP Detail		 Chr2:74546471 Cpgi11803 within coordinates of
Hoxd3 within coordinates of
Hoxd3os1 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24627 within coordinates of
Tssr24628 10 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239119203
MGI SNP Detail		 Chr2:74546475 Cpgi11803 within coordinates of
Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24627 within coordinates of
Tssr24628 6 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252087075
MGI SNP Detail		 Chr2:74546481 Cpgi11803 within coordinates of
Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220512788
MGI SNP Detail		 Chr2:74546618 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr44609 within coordinates of
Rr57045 within coordinates of
Tssr24628 117 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T T T T T T
rs245436641
MGI SNP Detail		 Chr2:74546664 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr44609 within coordinates of
Rr57045 within coordinates of
Tssr24628 163 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs264203034
MGI SNP Detail		 Chr2:74546698 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr44609 within coordinates of
Rr57045 within coordinates of
Tssr24628 197 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27967853
MGI SNP Detail		 Chr2:74546738 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr44609 within coordinates of
Rr57045 within coordinates of
Tssr24628 237 bp upstream
 SNP C/T T T T T T T T T T C T T C T
rs239501612
MGI SNP Detail		 Chr2:74546752 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr44609 within coordinates of
Rr57045 within coordinates of
Tssr24628 251 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258438705
MGI SNP Detail		 Chr2:74546753 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr44609 within coordinates of
Rr57045 within coordinates of
Tssr24628 252 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs224997443
MGI SNP Detail		 Chr2:74546899 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 398 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244371053
MGI SNP Detail		 Chr2:74546908 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 407 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27967852
MGI SNP Detail		 Chr2:74546911 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 410 bp upstream
 SNP C/T C C C C C C C C C T C C T C
rs228329213
MGI SNP Detail		 Chr2:74546932 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 431 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258877017
MGI SNP Detail		 Chr2:74546934 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 433 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585455675
MGI SNP Detail		 Chr2:74546971 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 470 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs219123121
MGI SNP Detail		 Chr2:74546972 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 471 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs239988400
MGI SNP Detail		 Chr2:74547012 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 511 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs253483477
MGI SNP Detail		 Chr2:74547013 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 512 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G A G G G A G G G G G G G G G G G G
rs213539351
MGI SNP Detail		 Chr2:74547056 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 555 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs231907296
MGI SNP Detail		 Chr2:74547108 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 607 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27967851
MGI SNP Detail		 Chr2:74547141 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 640 bp upstream
 SNP C/G C C C C C C C C C G C C G C
rs220361075
MGI SNP Detail		 Chr2:74547265 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 764 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242246789
MGI SNP Detail		 Chr2:74547309 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 808 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T T T G T T T G T T T T T T T T T T T T
rs578553108
MGI SNP Detail		 Chr2:74547314 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 813 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs227148157
MGI SNP Detail		 Chr2:74547318 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 817 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs239611782
MGI SNP Detail		 Chr2:74547320 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 819 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs258349849
MGI SNP Detail		 Chr2:74547322 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 821 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs225623989
MGI SNP Detail		 Chr2:74547324 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 823 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs238126199
MGI SNP Detail		 Chr2:74547330 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 829 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs261313540
MGI SNP Detail		 Chr2:74547421 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 920 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228994079
MGI SNP Detail		 Chr2:74547471 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 970 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A G A A A G A A A A A A A A A A A A
rs253620228
MGI SNP Detail		 Chr2:74547496 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 995 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs266061013
MGI SNP Detail		 Chr2:74547499 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 998 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231589003
MGI SNP Detail		 Chr2:74547517 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1016 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247224051
MGI SNP Detail		 Chr2:74547528 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1027 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs213508160
MGI SNP Detail		 Chr2:74547529 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1028 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232653994
MGI SNP Detail		 Chr2:74547587 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57045 within coordinates of
Tssr24628 1086 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243439952
MGI SNP Detail		 Chr2:74547630 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1129 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs582626243
MGI SNP Detail		 Chr2:74547640 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1139 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212194169
MGI SNP Detail		 Chr2:74547642 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1141 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs586192427
MGI SNP Detail		 Chr2:74547651 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1150 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs237435124
MGI SNP Detail		 Chr2:74547743 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1242 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260298137
MGI SNP Detail		 Chr2:74547826 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1325 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs227265488
MGI SNP Detail		 Chr2:74547906 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1405 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C G C C C G C C C C C C C G C C C C
rs233166469
MGI SNP Detail		 Chr2:74547920 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1419 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
rs252302072
MGI SNP Detail		 Chr2:74547923 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1422 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219724137
MGI SNP Detail		 Chr2:74547957 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1456 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A G A A A G A A A A A A A G A A A A
rs238631744
MGI SNP Detail		 Chr2:74548099 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57046 within coordinates of
Tssr24628 1598 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G C G G G G C G G G G G C G G C G G G C G G G G G G G C G G G G
rs264735916
MGI SNP Detail		 Chr2:74548101 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57046 within coordinates of
Tssr24628 1600 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C T C C C T C C C C C C C T C C C C
rs221190694
MGI SNP Detail		 Chr2:74548104 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57046 within coordinates of
Tssr24628 1603 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs27967850
MGI SNP Detail		 Chr2:74548162 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57046 within coordinates of
Tssr24628 1661 bp upstream
 SNP C/T T T T T T T T T T C T T C T
rs264237416
MGI SNP Detail		 Chr2:74548287 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57046 within coordinates of
Tssr24628 1786 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227062655
MGI SNP Detail		 Chr2:74548382 Hoxd3 within coordinates of
Igs15 within coordinates of
Rr57046 within coordinates of
Tssr24628 1881 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T C T T T C T T T T T T T C T T T T
rs247192916
MGI SNP Detail		 Chr2:74548491 Hoxd3 within coordinates of
Igs15 within coordinates of
Tssr24628 1990 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C T C C C T C C C C C C C C C C C C
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Showing SNP(s) 1 - 89 of 89
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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