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Mouse SNP Summary
Symbol
Name
ID 		Tssr24898
transcription start site region 24898
MGI:5952665

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Showing SNP(s) 1 - 36 of 36

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs28049367
MGI SNP Detail		 Chr2:79284140 Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 903 bp downstream
 SNP C/T C C C T T C
rs247620420
MGI SNP Detail		 Chr2:79284261 Cpgi11842 within coordinates of
Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24893 within coordinates of
Tssr24898 782 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T C T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs261031809
MGI SNP Detail		 Chr2:79284263 Cpgi11842 within coordinates of
Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24893 within coordinates of
Tssr24898 780 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs222059880
MGI SNP Detail		 Chr2:79284422 Cpgi11842 within coordinates of
Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 621 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs236770629
MGI SNP Detail		 Chr2:79284647 Cpgi11842 within coordinates of
Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 396 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254005487
MGI SNP Detail		 Chr2:79284748 Cpgi11842 within coordinates of
Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 295 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
rs226149300
MGI SNP Detail		 Chr2:79285160 Cpgi11842 within coordinates of
Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 106 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C T C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs28049366
MGI SNP Detail		 Chr2:79285437 Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 383 bp upstream
 SNP A/G G G G G G G G G A G G A G
rs28049365
MGI SNP Detail		 Chr2:79285507 Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 453 bp upstream
 SNP C/T C C C C C C C C C C T C C C
rs231923283
MGI SNP Detail		 Chr2:79285524 Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 470 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs260434759
MGI SNP Detail		 Chr2:79285548 Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 494 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C T C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs217215035
MGI SNP Detail		 Chr2:79285550 Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 496 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228395545
MGI SNP Detail		 Chr2:79285552 Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 498 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A G A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs244052177
MGI SNP Detail		 Chr2:79285628 Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 574 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs211772849
MGI SNP Detail		 Chr2:79285665 Neurod1 within coordinates of
Rr373416 within coordinates of
Tssr24898 611 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28049364
MGI SNP Detail		 Chr2:79285674 Neurod1 within coordinates of
Tssr24898 620 bp upstream
 SNP G/T G G G G G G G G G T G G T G
rs28049363
MGI SNP Detail		 Chr2:79285705 Neurod1 within coordinates of
Tssr24898 651 bp upstream
 SNP C/T T T T T T T T T T C T T C T
rs217092074
MGI SNP Detail		 Chr2:79285728 Neurod1 within coordinates of
Tssr24898 674 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs28049362
MGI SNP Detail		 Chr2:79285737 Neurod1 within coordinates of
Tssr24898 683 bp upstream
 SNP A/C C C C C C C C C C A C C A C
rs264119898
MGI SNP Detail		 Chr2:79285769 Neurod1 within coordinates of
Tssr24898 715 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28049361
MGI SNP Detail		 Chr2:79285789 Neurod1 within coordinates of
Tssr24898 735 bp upstream
 SNP C/T T T T T T T T T T C C T C T
rs230912950
MGI SNP Detail		 Chr2:79285791 Neurod1 within coordinates of
Tssr24898 737 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248315822
MGI SNP Detail		 Chr2:79285808 Neurod1 within coordinates of
Tssr24898 754 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220120711
MGI SNP Detail		 Chr2:79285818 Neurod1 within coordinates of
Tssr24898 764 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs246012634
MGI SNP Detail		 Chr2:79285868 Neurod1 within coordinates of
Tssr24898 814 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263828696
MGI SNP Detail		 Chr2:79285960 Neurod1 within coordinates of
Tssr24898 906 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G A G G G G G A G G G A A G G G G G A G G G G G G A G G G G G G G A G G G G
rs224625261
MGI SNP Detail		 Chr2:79285978 Neurod1 within coordinates of
Tssr24898 924 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs232558071
MGI SNP Detail		 Chr2:79286024 Neurod1 within coordinates of
Tssr24898 970 bp upstream
 SNP C/G C G
rs248645139
MGI SNP Detail		 Chr2:79286380 Neurod1 within coordinates of
Tssr24898 1326 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C T C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs28049360
MGI SNP Detail		 Chr2:79286407 Neurod1 within coordinates of
Tssr24898 1353 bp upstream
 SNP C/T T T T T T T T T T C T T C T
rs225219677
MGI SNP Detail		 Chr2:79286415 Neurod1 within coordinates of
Tssr24898 1361 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244087026
MGI SNP Detail		 Chr2:79286490 Neurod1 within coordinates of
Tssr24898 1436 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579549084
MGI SNP Detail		 Chr2:79286530 Neurod1 within coordinates of
Tssr24898 1476 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T G T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs582089568
MGI SNP Detail		 Chr2:79286535 Neurod1 within coordinates of
Tssr24898 1481 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T G T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs585718269
MGI SNP Detail		 Chr2:79286540 Neurod1 within coordinates of
Tssr24898 1486 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T G T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
rs579903318
MGI SNP Detail		 Chr2:79286545 Neurod1 within coordinates of
Tssr24898 1491 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T G T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T T T T T T
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Showing SNP(s) 1 - 36 of 36
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory