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Mouse SNP Summary
Symbol
Name
ID 		Tssr25005
transcription start site region 25005
MGI:5952772

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Showing SNP(s) 1 - 57 of 57

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/Sv
129X1/SvJ
A
A/He
A/J
AKR
AKR/J
B10.D2-H2<d>
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/c
BALB/cBy
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/He
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MRL/Mp
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs28044659
MGI SNP Detail		 Chr2:84429884 Tssr25005 1917 bp downstream
 SNP A/G G G G G G G G G G G G G G A G
rs28044658
MGI SNP Detail		 Chr2:84429915 Tssr25005 1886 bp downstream
 SNP C/G C C G G G C G C C G G C C G C G G G G
rs253191477
MGI SNP Detail		 Chr2:84429971 Tssr25005 1830 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T C T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs223777852
MGI SNP Detail		 Chr2:84430012 Tssr25005 1789 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A G A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs235882818
MGI SNP Detail		 Chr2:84430030 Tssr25005 1771 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs250708682
MGI SNP Detail		 Chr2:84430059 Tssr25005 1742 bp downstream
 SNP A/C/T A A A A A A A A A A A A A A A A C A A A A A C A A A A C A A A A A A A A A A A A C A A A A A A A T A A A A
rs220107709
MGI SNP Detail		 Chr2:84430060 Tssr25005 1741 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs246550263
MGI SNP Detail		 Chr2:84430065 Tssr25005 1736 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262214409
MGI SNP Detail		 Chr2:84430094 Tssr25005 1707 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T C T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs224737911
MGI SNP Detail		 Chr2:84430102 Tssr25005 1699 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G C G G G G G C G G G G C G G G G G G G G G G G G C G G G G G G G C G G G G
rs244748834
MGI SNP Detail		 Chr2:84430104 Tssr25005 1697 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G A G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G A G G G G
rs28044657
MGI SNP Detail		 Chr2:84430245 Tssr25005 1556 bp downstream
 SNP C/T C C C C C C C C C C T C C T C
rs28044656
MGI SNP Detail		 Chr2:84430271 Tssr25005 1530 bp downstream
 SNP C/T C C T T T C T C T T T C C T C T T T T
rs242996564
MGI SNP Detail		 Chr2:84430300 Tssr25005 1501 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs253756877
MGI SNP Detail		 Chr2:84430320 Tssr25005 1481 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs586899296
MGI SNP Detail		 Chr2:84430328 Tssr25005 1473 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs28044655
MGI SNP Detail		 Chr2:84430343 Tssr25005 1458 bp downstream
 SNP C/T T T T T T T T T C T T C T
rs256463464
MGI SNP Detail		 Chr2:84430426 Ctnnd1 within coordinates of
Tssr25005 1375 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs28044654
MGI SNP Detail		 Chr2:84430510 Ctnnd1 within coordinates of
Tssr25005 1291 bp downstream
 SNP C/T C C C C C C C C C T C C T C
rs241212859
MGI SNP Detail		 Chr2:84430629 Ctnnd1 within coordinates of
Tssr25005 1172 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28044653
MGI SNP Detail		 Chr2:84430707 Ctnnd1 within coordinates of
Tssr25005 1094 bp downstream
 SNP G/T G G G G G G G G G T G G T G
rs217814808
MGI SNP Detail		 Chr2:84430790 Ctnnd1 within coordinates of
Tssr25005 1011 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs28044652
MGI SNP Detail		 Chr2:84430822 Ctnnd1 within coordinates of
Tssr25005 979 bp downstream
 SNP C/T T T T T T T T T T T C T T T T
rs28044651
MGI SNP Detail		 Chr2:84431016 Ctnnd1 within coordinates of
Tssr25005 785 bp downstream
 SNP A/G G G G G G G G G G G G G G A G
rs28044650
MGI SNP Detail		 Chr2:84431049 Ctnnd1 within coordinates of
Tssr25005 752 bp downstream
 SNP C/T C C C C C C C C C C T C C T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/Sv
129X1/SvJ
A
A/He
A/J
AKR
AKR/J
B10.D2-H2<d>
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/c
BALB/cBy
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/He
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MRL/Mp
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs236781642
MGI SNP Detail		 Chr2:84431140 Ctnnd1 within coordinates of
Tssr25005 661 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28044649
MGI SNP Detail		 Chr2:84431410 Ctnnd1 within coordinates of
Tssr25005 391 bp downstream
 SNP A/G A A A A A A A A A A A G G A A G A
rs28044648
MGI SNP Detail		 Chr2:84431528 Ctnnd1 within coordinates of
Tssr25005 273 bp downstream
 SNP C/T C C C C C C C C C C T T C C T C
rs6330840
MGI SNP Detail		 Chr2:84431581 Ctnnd1 within coordinates of
Tssr25005 220 bp downstream
 SNP C/T C C C C C C C C C T C C C T T C C T C
rs6331812
MGI SNP Detail		 Chr2:84431731 Ctnnd1 within coordinates of
Tssr25005 70 bp downstream
 SNP A/T A T
rs221941915
MGI SNP Detail		 Chr2:84431794 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 7 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs236624094
MGI SNP Detail		 Chr2:84431917 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 82 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs253809685
MGI SNP Detail		 Chr2:84431918 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 83 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6345373
MGI SNP Detail		 Chr2:84431943 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 108 bp upstream
 SNP C/G G C
rs230990634
MGI SNP Detail		 Chr2:84432033 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 198 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs13475343
MGI SNP Detail		 Chr2:84432061 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 226 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs28044647
MGI SNP Detail		 Chr2:84432082 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 247 bp upstream
 SNP A/G G G G G G G G A G G G
rs13475346
MGI SNP Detail		 Chr2:84432223 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 388 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs232541168
MGI SNP Detail		 Chr2:84432263 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 428 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246573255
MGI SNP Detail		 Chr2:84432272 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 437 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217444427
MGI SNP Detail		 Chr2:84432279 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 444 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228871157
MGI SNP Detail		 Chr2:84432456 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 621 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C C C C C C C C C C C C C C C T T
rs3022888
MGI SNP Detail		 Chr2:84432484 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 649 bp upstream
 SNP C/T T T T T T C T C C T C C T T T C T C T T C C T C C C C T C C C C C T T C C C C T C T T T T C C T C C T C C C C T T C C
rs13475344
MGI SNP Detail		 Chr2:84432544 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 709 bp upstream
 SNP C/T C C C C C C C C C C C C T C
rs13475345
MGI SNP Detail		 Chr2:84432566 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 731 bp upstream
 SNP C/T T T T T T T T T T C T T C
rs387397894
MGI SNP Detail		 Chr2:84432773 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 938 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs257351273
MGI SNP Detail		 Chr2:84432812 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 977 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216950327
MGI SNP Detail		 Chr2:84433122 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1287 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232618470
MGI SNP Detail		 Chr2:84433169 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1334 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs584418297
MGI SNP Detail		 Chr2:84433234 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1399 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/Sv
129X1/SvJ
A
A/He
A/J
AKR
AKR/J
B10.D2-H2<d>
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/c
BALB/cBy
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/He
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MRL/Mp
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/Lac
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252951609
MGI SNP Detail		 Chr2:84433423 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1588 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221736211
MGI SNP Detail		 Chr2:84433573 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1738 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28044646
MGI SNP Detail		 Chr2:84433653 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1818 bp upstream
 SNP A/C A A A A A A A A A A A C
rs28044645
MGI SNP Detail		 Chr2:84433664 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1829 bp upstream
 SNP C/T T T C C C T T C C T T C T C C C
rs28044644
MGI SNP Detail		 Chr2:84433700 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1865 bp upstream
 SNP A/G A A A A A A A A A G A A A A
rs223360844
MGI SNP Detail		 Chr2:84433764 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1929 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A G A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs245864713
MGI SNP Detail		 Chr2:84433808 Ctnnd1 within coordinates of
Gm28635 within coordinates of
Tssr25005 1973 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
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Showing SNP(s) 1 - 57 of 57
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory