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Mouse SNP Summary
Symbol
Name
ID
Tssr25954
transcription start site region 25954
MGI:5953721

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs211975180
MGI SNP Detail
Chr2:121976043 Patl2 within coordinates of
Tssr25954 1940 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs238898444
MGI SNP Detail
Chr2:121976052 Patl2 within coordinates of
Tssr25954 1931 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs256868439
MGI SNP Detail
Chr2:121976295 Patl2 within coordinates of
Tssr25954 1688 bp downstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs224856848
MGI SNP Detail
Chr2:121976321 Patl2 within coordinates of
Tssr25954 1662 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs244897957
MGI SNP Detail
Chr2:121976346 Patl2 within coordinates of
Tssr25954 1637 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254976894
MGI SNP Detail
Chr2:121976399 Patl2 within coordinates of
Tssr25954 1584 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs33599431
MGI SNP Detail
Chr2:121976408 Patl2 within coordinates of
Tssr25954 1575 bp downstream
SNP C/T T C C C
rs242395441
MGI SNP Detail
Chr2:121976552 Patl2 within coordinates of
Tssr25954 1431 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs32822177
MGI SNP Detail
Chr2:121976554 Patl2 within coordinates of
Tssr25954 1429 bp downstream
SNP A/G G G A G A G
rs27425715
MGI SNP Detail
Chr2:121976656 Patl2 within coordinates of
Tssr25954 1327 bp downstream
SNP A/G G G G G G G A G G A A A G A G G
rs247140723
MGI SNP Detail
Chr2:121976733 Patl2 within coordinates of
Tssr25954 1250 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs579750754
MGI SNP Detail
Chr2:121976753 Patl2 within coordinates of
Tssr25954 1230 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs262467344
MGI SNP Detail
Chr2:121976883 Patl2 within coordinates of
Tssr25954 1100 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233371377
MGI SNP Detail
Chr2:121976941 Patl2 within coordinates of
Tssr25954 1042 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs252448939
MGI SNP Detail
Chr2:121977075 Patl2 within coordinates of
Tssr25954 908 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217392295
MGI SNP Detail
Chr2:121977093 Patl2 within coordinates of
Tssr25954 890 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228503840
MGI SNP Detail
Chr2:121977159 Patl2 within coordinates of
Tssr25954 824 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs243068594
MGI SNP Detail
Chr2:121977174 Patl2 within coordinates of
Tssr25954 809 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs211992692
MGI SNP Detail
Chr2:121977308 Patl2 within coordinates of
Tssr25954 675 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236879936
MGI SNP Detail
Chr2:121977359 Patl2 within coordinates of
Tssr25954 624 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27425714
MGI SNP Detail
Chr2:121977496 Patl2 within coordinates of
Tssr25954 487 bp downstream
SNP G/T T G G T G G G G T G T
rs216529668
MGI SNP Detail
Chr2:121977528 Patl2 within coordinates of
Tssr25954 455 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27425713
MGI SNP Detail
Chr2:121977589 Patl2 within coordinates of
Tssr25954 394 bp downstream
SNP C/T C T C T C C T C C T T C T
rs33620463
MGI SNP Detail
Chr2:121977648 Patl2 within coordinates of
Tssr25954 335 bp downstream
SNP A/G A G A G A
rs222355399
MGI SNP Detail
Chr2:121977680 Patl2 within coordinates of
Rr563912 within coordinates of
Tssr25954 303 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230279404
MGI SNP Detail
Chr2:121977883 Patl2 within coordinates of
Rr563912 within coordinates of
Tssr25954 100 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs250836689
MGI SNP Detail
Chr2:121977896 Patl2 within coordinates of
Rr563912 within coordinates of
Tssr25954 87 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs220501301
MGI SNP Detail
Chr2:121977991 Patl2 within coordinates of
Rr397252 within coordinates of
Rr563912 within coordinates of
Tssr25954 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244602116
MGI SNP Detail
Chr2:121978001 Patl2 within coordinates of
Rr397252 within coordinates of
Rr563912 within coordinates of
Tssr25954 within coordinates of
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27425712
MGI SNP Detail
Chr2:121978072 Patl2 within coordinates of
Rr397252 within coordinates of
Rr563912 within coordinates of
Tssr25954 71 bp upstream
SNP C/T T C T C T C C C T C C T T C T
rs581933124
MGI SNP Detail
Chr2:121978079 Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr397252 within coordinates of
Rr563912 within coordinates of
Tssr25954 78 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs585924879
MGI SNP Detail
Chr2:121978080 Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr397252 within coordinates of
Rr563912 within coordinates of
Tssr25954 79 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs579972925
MGI SNP Detail
Chr2:121978155 Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr397252 within coordinates of
Rr563912 within coordinates of
Tssr25954 154 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs225218863
MGI SNP Detail
Chr2:121978166 Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr397252 within coordinates of
Rr563912 within coordinates of
Tssr19805 within coordinates of
Tssr25954 165 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239441816
MGI SNP Detail
Chr2:121978218 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 217 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs13467834
MGI SNP Detail
Chr2:121978270 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 269 bp upstream
SNP C/T C T C T C T
rs27425711
MGI SNP Detail
Chr2:121978303 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 302 bp upstream
SNP C/T T T T T T T C C T T C C C T T C T T
rs243103333
MGI SNP Detail
Chr2:121978323 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 322 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs261553537
MGI SNP Detail
Chr2:121978325 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 324 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs27425710
MGI SNP Detail
Chr2:121978356 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 355 bp upstream
SNP A/G G G G G G G A G G G G G G G G
rs250659508
MGI SNP Detail
Chr2:121978431 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 430 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217054434
MGI SNP Detail
Chr2:121978462 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 461 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27425709
MGI SNP Detail
Chr2:121978526 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 525 bp upstream
SNP A/C C C C C C A C C C A A A C A C C
rs248597887
MGI SNP Detail
Chr2:121978568 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 567 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs27425708
MGI SNP Detail
Chr2:121978593 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 592 bp upstream
SNP A/C C A C A C A C A C C C C C C C A C
rs27425707
MGI SNP Detail
Chr2:121978647 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 646 bp upstream
SNP C/G C C C C C C G C C C C C C C C
rs27425706
MGI SNP Detail
Chr2:121978667 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 666 bp upstream
SNP A/G G A G A G A G G A G G G G G G G A G
rs27425705
MGI SNP Detail
Chr2:121978696 B2m within coordinates of
Cpgi12169 within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 695 bp upstream
SNP A/T T T T T T T A A T T A A A T T A T T
rs239476324
MGI SNP Detail
Chr2:121978744 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 743 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs257432387
MGI SNP Detail
Chr2:121978748 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 747 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs29669427
MGI SNP Detail
Chr2:121978783 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 782 bp upstream
SNP C/T T T C C T
rs239457000
MGI SNP Detail
Chr2:121978798 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 797 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs260057416
MGI SNP Detail
Chr2:121978830 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 829 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222134076
MGI SNP Detail
Chr2:121978861 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 860 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs29498577
MGI SNP Detail
Chr2:121978908 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 907 bp upstream
SNP A/T T A T T A
rs264678247
MGI SNP Detail
Chr2:121979052 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 1051 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33242547
MGI SNP Detail
Chr2:121979055 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 1054 bp upstream
SNP A/G G G A G A G
rs255249258
MGI SNP Detail
Chr2:121979179 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 1178 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs263542625
MGI SNP Detail
Chr2:121979565 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 1564 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27425704
MGI SNP Detail
Chr2:121979583 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 1582 bp upstream
SNP C/T C C T C T C T T C C C C C T C
rs248631671
MGI SNP Detail
Chr2:121979613 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr25954 1612 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216564468
MGI SNP Detail
Chr2:121979655 B2m within coordinates of
Patl2 within coordinates of
Rr563913 within coordinates of
Tssr19807 within coordinates of
Tssr25954 1654 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29813515
MGI SNP Detail
Chr2:121979736 B2m within coordinates of
Patl2 within coordinates of
Tssr19808 within coordinates of
Tssr25954 1735 bp upstream
SNP A/T T T A T A T
rs243295188
MGI SNP Detail
Chr2:121979751 B2m within coordinates of
Patl2 within coordinates of
Tssr25954 1750 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs214798221
MGI SNP Detail
Chr2:121979876 B2m within coordinates of
Patl2 within coordinates of
Tssr25954 1875 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235858868
MGI SNP Detail
Chr2:121979998 B2m within coordinates of
Patl2 within coordinates of
Tssr25954 1997 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 66 of 66

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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory