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Mouse SNP Summary
Symbol
Name
ID
Tssr26511
transcription start site region 26511
MGI:5954278

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229688460
MGI SNP Detail
Alliance Variant
Chr2:134484104 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1971 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs249140161
MGI SNP Detail
Alliance Variant
Chr2:134484124 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1951 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs235067034
MGI SNP Detail
Alliance Variant
Chr2:134484151 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1924 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583307942
MGI SNP Detail
Alliance Variant
Chr2:134484246 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1829 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253176121
MGI SNP Detail
Alliance Variant
Chr2:134484353 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1722 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs223765678
MGI SNP Detail
Alliance Variant
Chr2:134484408 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1667 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238246736
MGI SNP Detail
Alliance Variant
Chr2:134484614 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1461 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs256475183
MGI SNP Detail
Alliance Variant
Chr2:134484747 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1328 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs220162872
MGI SNP Detail
Alliance Variant
Chr2:134484748 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1327 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
rs241657295
MGI SNP Detail
Alliance Variant
Chr2:134484763 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1312 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs259823720
MGI SNP Detail
Alliance Variant
Chr2:134484863 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1212 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs221962097
MGI SNP Detail
Alliance Variant
Chr2:134484968 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1107 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239894173
MGI SNP Detail
Alliance Variant
Chr2:134485054 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 1021 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265457778
MGI SNP Detail
Alliance Variant
Chr2:134485096 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 979 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230791654
MGI SNP Detail
Alliance Variant
Chr2:134485143 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 932 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs245667843
MGI SNP Detail
Alliance Variant
Chr2:134485146 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 929 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs261844154
MGI SNP Detail
Alliance Variant
Chr2:134485174 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 901 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223902332
MGI SNP Detail
Alliance Variant
Chr2:134485289 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 786 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs248516719
MGI SNP Detail
Alliance Variant
Chr2:134485392 Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 683 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs217014483
MGI SNP Detail
Alliance Variant
Chr2:134485607 Cpgi12319 within coordinates of
Tmx4 Intron
Tmx4 Noncoding-Transcript-Variant
Tssr26511 468 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G
rs228284809
MGI SNP Detail
Alliance Variant
Chr2:134485845 Cpgi12319 within coordinates of
Tmx4 Coding-Synonymous
Tmx4 Noncoding-Transcript-Variant
Tssr26511 230 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs252712413
MGI SNP Detail
Alliance Variant
Chr2:134485904 Cpgi12319 within coordinates of
Tmx4 Coding-NonSynonymous
Tmx4 Noncoding-Transcript-Variant
Tssr26511 171 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215456928
MGI SNP Detail
Alliance Variant
Chr2:134485934 Cpgi12319 within coordinates of
Tmx4 mRNA-UTR
Tmx4 Noncoding-Transcript-Variant
Tssr26511 141 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C T C C C C C C C C C C C C
rs236481313
MGI SNP Detail
Alliance Variant
Chr2:134486048 Cpgi12319 within coordinates of
Rr397337 within coordinates of
Rr565676 within coordinates of
Tmx4 mRNA-UTR
Tmx4 Noncoding-Transcript-Variant
Tssr26510 within coordinates of
Tssr26511 27 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G C G G G G G G C G G G G
rs47363093
MGI SNP Detail
Chr2:134486115 Cpgi12319 within coordinates of
Rr397337 within coordinates of
Rr565676 within coordinates of
Tssr26511 29 bp upstream
SNP A/C C A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212291928
MGI SNP Detail
Chr2:134486185 Cpgi12319 within coordinates of
Rr397337 within coordinates of
Rr565676 within coordinates of
Tssr26511 99 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs235254199
MGI SNP Detail
Chr2:134486317 Rr565676 within coordinates of
Tssr26511 231 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs252712348
MGI SNP Detail
Chr2:134486371 Rr565676 within coordinates of
Tssr26511 285 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs29869310
MGI SNP Detail
Chr2:134486438 Rr565676 within coordinates of
Tssr26511 352 bp upstream
SNP G/T G T T T G G
rs583764407
MGI SNP Detail
Chr2:134486443 Rr565676 within coordinates of
Tssr26511 357 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs239959573
MGI SNP Detail
Chr2:134486483 Rr565676 within coordinates of
Tssr26511 397 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T T T T A T T T T
rs258636454
MGI SNP Detail
Chr2:134486510 Rr565676 within coordinates of
Tssr26511 424 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222974533
MGI SNP Detail
Chr2:134486600 Tssr26511 514 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243034176
MGI SNP Detail
Chr2:134486671 Tssr26511 585 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs264800716
MGI SNP Detail
Chr2:134486771 Tssr26511 685 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224063292
MGI SNP Detail
Chr2:134486772 Tssr26511 686 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242560255
MGI SNP Detail
Chr2:134486804 Tssr26511 718 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C G C C C C
rs260340134
MGI SNP Detail
Chr2:134486878 Tssr26511 792 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs227839436
MGI SNP Detail
Chr2:134486929 Tssr26511 843 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs257695417
MGI SNP Detail
Chr2:134486962 Tssr26511 876 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs215216421
MGI SNP Detail
Chr2:134486963 Tssr26511 877 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs230518859
MGI SNP Detail
Chr2:134487004 Tssr26511 918 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250204889
MGI SNP Detail
Chr2:134487017 Tssr26511 931 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs212256059
MGI SNP Detail
Chr2:134487023 Tssr26511 937 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs235309707
MGI SNP Detail
Chr2:134487127 Tssr26511 1041 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252756854
MGI SNP Detail
Chr2:134487143 Tssr26511 1057 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs587352896
MGI SNP Detail
Chr2:134487175 Tssr26511 1089 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215964816
MGI SNP Detail
Chr2:134487182 Tssr26511 1096 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237986297
MGI SNP Detail
Chr2:134487291 Tssr26511 1205 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs27252454
MGI SNP Detail
Chr2:134487292 Tssr26511 1206 bp upstream
SNP C/T C C C C C C T C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223434274
MGI SNP Detail
Chr2:134487293 Tssr26511 1207 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs245817194
MGI SNP Detail
Chr2:134487386 Tssr26511 1300 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs32933634
MGI SNP Detail
Chr2:134487423 Tssr26511 1337 bp upstream
SNP A/G A G G G
rs33541994
MGI SNP Detail
Chr2:134487426 Tssr26511 1340 bp upstream
SNP C/G G C C C
rs33758605
MGI SNP Detail
Chr2:134487429 Tssr26511 1343 bp upstream
SNP A/T A T T T
rs581772202
MGI SNP Detail
Chr2:134487462 Tssr26511 1376 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A C A A A A A A C A A A A A A A A A A A A
rs260467055
MGI SNP Detail
Chr2:134487498 Tssr26511 1412 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C T T T T T T C T T T T T T T T T T T T
rs221462326
MGI SNP Detail
Chr2:134487591 Tssr26511 1505 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244826086
MGI SNP Detail
Chr2:134487599 Tssr26511 1513 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs27252453
MGI SNP Detail
Chr2:134487685 Tssr26511 1599 bp upstream
SNP C/T C C T T T C T T T T C T T C C
rs583090617
MGI SNP Detail
Chr2:134487686 Tssr26511 1600 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230559996
MGI SNP Detail
Chr2:134487728 Tssr26511 1642 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254677175
MGI SNP Detail
Chr2:134487734 Tssr26511 1648 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254111651
MGI SNP Detail
Chr2:134487752 Tssr26511 1666 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs229489605
MGI SNP Detail
Chr2:134487784 Tssr26511 1698 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G C G G G G C G G G G G C G G G G G G G G G G G G G C G G G G
rs246831467
MGI SNP Detail
Chr2:134487823 Tssr26511 1737 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C C C C C C C C T C C C C
rs29673148
MGI SNP Detail
Chr2:134487851 Tssr26511 1765 bp upstream
SNP A/G A A G A A
rs27252452
MGI SNP Detail
Chr2:134487858 Tssr26511 1772 bp upstream
SNP A/G G G A A A G A G A A G A A G G
rs251637174
MGI SNP Detail
Chr2:134487875 Tssr26511 1789 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs214300702
MGI SNP Detail
Chr2:134487991 Tssr26511 1905 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G A G G G G
rs236153456
MGI SNP Detail
Chr2:134488078 Tssr26511 1992 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
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Showing SNP(s) 1 - 71 of 71

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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