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Mouse SNP Summary
Symbol
Name
ID 		Tssr27880
transcription start site region 27880
MGI:5955647

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Showing SNP(s) 1 - 48 of 48

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259673756
MGI SNP Detail		 Chr2:168607167 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27873 within coordinates of
Tssr27880 1829 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs227264909
MGI SNP Detail		 Chr2:168607183 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1813 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239563323
MGI SNP Detail		 Chr2:168607441 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1555 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs257549227
MGI SNP Detail		 Chr2:168607463 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1533 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs27287875
MGI SNP Detail		 Chr2:168607496 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1500 bp downstream
 SNP C/G C C C C C C C C C C C C C G C
rs249988648
MGI SNP Detail		 Chr2:168607616 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1380 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212282094
MGI SNP Detail		 Chr2:168607764 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1232 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs234047964
MGI SNP Detail		 Chr2:168607782 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1214 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs585104082
MGI SNP Detail		 Chr2:168607813 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1183 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs246892726
MGI SNP Detail		 Chr2:168607978 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1018 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587512411
MGI SNP Detail		 Chr2:168607992 Cpgi12778 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 1004 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs216086883
MGI SNP Detail		 Chr2:168608226 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 770 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233125520
MGI SNP Detail		 Chr2:168608256 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 740 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244789595
MGI SNP Detail		 Chr2:168608372 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 624 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214285806
MGI SNP Detail		 Chr2:168608448 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 548 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237506582
MGI SNP Detail		 Chr2:168608573 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27877 within coordinates of
Tssr27880 423 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs255187319
MGI SNP Detail		 Chr2:168608742 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 254 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226820530
MGI SNP Detail		 Chr2:168608876 Cpgi12778 within coordinates of
Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Sall4 within coordinates of
Tssr27880 120 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A A A T A A A A A A A T A A A T
rs27287874
MGI SNP Detail		 Chr2:168609330 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Tssr27880 327 bp upstream
 SNP A/G A A A A A A A A A A A A A G A
rs253426529
MGI SNP Detail		 Chr2:168609741 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Tssr27880 738 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220801189
MGI SNP Detail		 Chr2:168609786 Gm14261 within coordinates of
Rr374246 within coordinates of
Rr56145 within coordinates of
Tssr27880 783 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239604968
MGI SNP Detail		 Chr2:168609808 Gm14261 within coordinates of
Rr374246 within coordinates of
Tssr27880 805 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27287873
MGI SNP Detail		 Chr2:168609809 Gm14261 within coordinates of
Rr374246 within coordinates of
Tssr27880 806 bp upstream
 SNP A/G A A A A A A A A A A A A A G A
rs221490140
MGI SNP Detail		 Chr2:168609810 Gm14261 within coordinates of
Rr374246 within coordinates of
Tssr27880 807 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs243928251
MGI SNP Detail		 Chr2:168609945 Gm14261 within coordinates of
Rr374246 within coordinates of
Tssr27880 942 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27287872
MGI SNP Detail		 Chr2:168609950 Gm14261 within coordinates of
Rr374246 within coordinates of
Tssr27880 947 bp upstream
 SNP A/G A A A A A A A A A A A A A G A
rs235097529
MGI SNP Detail		 Chr2:168609986 Gm14261 within coordinates of
Rr374246 within coordinates of
Tssr27880 983 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246749752
MGI SNP Detail		 Chr2:168610101 Rr374246 within coordinates of
Tssr27880 1098 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258329520
MGI SNP Detail		 Chr2:168610260 Rr374246 within coordinates of
Tssr27880 1257 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226962637
MGI SNP Detail		 Chr2:168610276 Rr374246 within coordinates of
Tssr27880 1273 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs27287871
MGI SNP Detail		 Chr2:168610359 Rr374246 within coordinates of
Tssr27880 1356 bp upstream
 SNP G/T G G G G G G G G G G G G G T G
rs214477362
MGI SNP Detail		 Chr2:168610377 Rr374246 within coordinates of
Tssr27880 1374 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs235662257
MGI SNP Detail		 Chr2:168610417 Rr374246 within coordinates of
Tssr27880 1414 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253462791
MGI SNP Detail		 Chr2:168610431 Rr374246 within coordinates of
Tssr27880 1428 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs581584734
MGI SNP Detail		 Chr2:168610448 Rr374246 within coordinates of
Tssr27880 1445 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584793177
MGI SNP Detail		 Chr2:168610453 Rr374246 within coordinates of
Tssr27880 1450 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582250941
MGI SNP Detail		 Chr2:168610492 Rr374246 within coordinates of
Tssr27880 1489 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219723390
MGI SNP Detail		 Chr2:168610560 Rr374246 within coordinates of
Tssr27880 1557 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235291742
MGI SNP Detail		 Chr2:168610570 Rr374246 within coordinates of
Tssr27880 1567 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253276346
MGI SNP Detail		 Chr2:168610642 Rr374246 within coordinates of
Tssr27880 1639 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs220838737
MGI SNP Detail		 Chr2:168610721 Rr374246 within coordinates of
Tssr27880 1718 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs232468475
MGI SNP Detail		 Chr2:168610741 Rr374246 within coordinates of
Tssr27880 1738 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs251120863
MGI SNP Detail		 Chr2:168610759 Rr374246 within coordinates of
Tssr27880 1756 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs220971601
MGI SNP Detail		 Chr2:168610772 Rr374246 within coordinates of
Tssr27880 1769 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs27287870
MGI SNP Detail		 Chr2:168610822 Rr374246 within coordinates of
Tssr27880 1819 bp upstream
 SNP C/G C C C C C C G C C C C C C C C
rs266140124
MGI SNP Detail		 Chr2:168610897 Rr374246 within coordinates of
Tssr27880 1894 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225718349
MGI SNP Detail		 Chr2:168610904 Rr374246 within coordinates of
Tssr27880 1901 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240922808
MGI SNP Detail		 Chr2:168610996 Rr374246 within coordinates of
Tssr27880 1993 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 48 of 48
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory