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Mouse SNP Summary
Symbol
Name
ID 		Tssr28190
transcription start site region 28190
MGI:5955957

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Showing SNP(s) 1 - 42 of 42

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222597244
MGI SNP Detail		 Chr2:180873916 Helz2 within coordinates of
Rr60511 within coordinates of
Tssr28190 1959 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C T T T C C C C C C C C C C C C C C C C C C T T C C C C C C C C C C C C C C
rs242471852
MGI SNP Detail		 Chr2:180873985 Helz2 within coordinates of
Rr60511 within coordinates of
Tssr28190 1890 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258776854
MGI SNP Detail		 Chr2:180874007 Helz2 within coordinates of
Tssr28190 1868 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227946304
MGI SNP Detail		 Chr2:180874204 Helz2 within coordinates of
Tssr28190 1671 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242828937
MGI SNP Detail		 Chr2:180874249 Helz2 within coordinates of
Tssr28190 1626 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27692925
MGI SNP Detail		 Chr2:180874388 Helz2 within coordinates of
Tssr28190 1487 bp downstream
 SNP C/T C C C C T C C C C C C C
rs231181791
MGI SNP Detail		 Chr2:180874429 Helz2 within coordinates of
Tssr28190 1446 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27692924
MGI SNP Detail		 Chr2:180874574 Helz2 within coordinates of
Tssr28190 1301 bp downstream
 SNP C/G G G G G G G C G G C G
rs254970303
MGI SNP Detail		 Chr2:180874596 Helz2 within coordinates of
Tssr28190 1279 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs228803771
MGI SNP Detail		 Chr2:180874684 Helz2 within coordinates of
Tssr28190 1191 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G A A A G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G G G G A
rs247564343
MGI SNP Detail		 Chr2:180874835 Helz2 within coordinates of
Tssr28190 1040 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27692923
MGI SNP Detail		 Chr2:180874916 Helz2 within coordinates of
Tssr28190 959 bp downstream
 SNP A/G G G G G A G G G G G G G
rs27692922
MGI SNP Detail		 Chr2:180874958 Helz2 within coordinates of
Tssr28190 917 bp downstream
 SNP A/G A A A A G A A A A A A A
rs27692921
MGI SNP Detail		 Chr2:180875117 Helz2 within coordinates of
Tssr28190 758 bp downstream
 SNP A/C A A A A A A A A C A
rs27692920
MGI SNP Detail		 Chr2:180875333 Helz2 within coordinates of
Tssr28190 542 bp downstream
 SNP C/T T T T T T C T C C T C T
rs27692919
MGI SNP Detail		 Chr2:180875423 Helz2 within coordinates of
Tssr28190 452 bp downstream
 SNP C/G C C C C G C C C C C C C C
rs261418977
MGI SNP Detail		 Chr2:180875484 Helz2 within coordinates of
Tssr28190 391 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27692918
MGI SNP Detail		 Chr2:180875549 Helz2 within coordinates of
Tssr28190 326 bp downstream
 SNP C/T T T T T T C T T C C T T C T
rs236354813
MGI SNP Detail		 Chr2:180875594 Helz2 within coordinates of
Tssr28190 281 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252529315
MGI SNP Detail		 Chr2:180875789 Helz2 within coordinates of
Tssr28190 86 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs221467090
MGI SNP Detail		 Chr2:180875808 Helz2 within coordinates of
Tssr28190 67 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs245545676
MGI SNP Detail		 Chr2:180876053 Helz2 within coordinates of
Tssr28190 132 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262677105
MGI SNP Detail		 Chr2:180876278 Helz2 within coordinates of
Tssr28190 357 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs219767309
MGI SNP Detail		 Chr2:180876353 Helz2 within coordinates of
Tssr28190 432 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27692917
MGI SNP Detail		 Chr2:180876435 Helz2 within coordinates of
Tssr28190 514 bp upstream
 SNP C/T C C C C T C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241552529
MGI SNP Detail		 Chr2:180876584 Helz2 within coordinates of
Tssr28190 663 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254858289
MGI SNP Detail		 Chr2:180876641 Helz2 within coordinates of
Tssr28190 720 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs13476945
MGI SNP Detail		 Chr2:180876753 Helz2 within coordinates of
Tssr28190 832 bp upstream
 SNP C/T T T C T T C C T T T C C C T C C C T T T C C T T C C C T T T C T T C T C T T C T T T C
rs247778874
MGI SNP Detail		 Chr2:180876754 Helz2 within coordinates of
Tssr28190 833 bp upstream
 SNP A/C/T C C C C C C C C C C C C C C C C C C C A C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs257610426
MGI SNP Detail		 Chr2:180877157 Helz2 within coordinates of
Tssr28190 1236 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232474906
MGI SNP Detail		 Chr2:180877219 Helz2 within coordinates of
Tssr28190 1298 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs255283635
MGI SNP Detail		 Chr2:180877230 Helz2 within coordinates of
Tssr28190 1309 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27692916
MGI SNP Detail		 Chr2:180877374 Helz2 within coordinates of
Tssr28190 1453 bp upstream
 SNP A/T T T A T T A A A A
rs214965118
MGI SNP Detail		 Chr2:180877393 Helz2 within coordinates of
Tssr28190 1472 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578425274
MGI SNP Detail		 Chr2:180877436 Helz2 within coordinates of
Tssr28190 1515 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27692915
MGI SNP Detail		 Chr2:180877460 Helz2 within coordinates of
Tssr28190 1539 bp upstream
 SNP C/T C C C C C T
rs27692914
MGI SNP Detail		 Chr2:180877467 Helz2 within coordinates of
Tssr28190 1546 bp upstream
 SNP A/G G A G G G G G
rs216547189
MGI SNP Detail		 Chr2:180877507 Helz2 within coordinates of
Tssr28190 1586 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236390196
MGI SNP Detail		 Chr2:180877625 Helz2 within coordinates of
Rr41658 within coordinates of
Tssr28190 1704 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252817520
MGI SNP Detail		 Chr2:180877698 Helz2 within coordinates of
Rr41658 within coordinates of
Tssr28190 1777 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27692913
MGI SNP Detail		 Chr2:180877770 Helz2 within coordinates of
Rr41658 within coordinates of
Tssr28190 1849 bp upstream
 SNP A/G A A A A A A A G A G
rs235878534
MGI SNP Detail		 Chr2:180877858 Helz2 within coordinates of
Rr41658 within coordinates of
Tssr28190 1937 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 42 of 42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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