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Mouse SNP Summary
Symbol
Name
ID
Tssr29513
transcription start site region 29513
MGI:5957280

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263717535
MGI SNP Detail
Chr3:68911266 Ift80 within coordinates of
Tssr29513 1994 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T T T T T
rs235928052
MGI SNP Detail
Chr3:68911280 Ift80 within coordinates of
Tssr29513 1980 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs256429622
MGI SNP Detail
Chr3:68911281 Ift80 within coordinates of
Tssr29513 1979 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs225485892
MGI SNP Detail
Chr3:68911323 Ift80 within coordinates of
Tssr29513 1937 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249405116
MGI SNP Detail
Chr3:68911349 Ift80 within coordinates of
Tssr29513 1911 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263269231
MGI SNP Detail
Chr3:68911397 Ift80 within coordinates of
Tssr29513 1863 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs235262322
MGI SNP Detail
Chr3:68911414 Ift80 within coordinates of
Tssr29513 1846 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254204683
MGI SNP Detail
Chr3:68911448 Ift80 within coordinates of
Tssr29513 1812 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs213234234
MGI SNP Detail
Chr3:68911459 Ift80 within coordinates of
Tssr29513 1801 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs224597678
MGI SNP Detail
Chr3:68911705 Ift80 within coordinates of
Tssr29513 1555 bp upstream
Tssr33516 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243209501
MGI SNP Detail
Chr3:68911751 Ift80 within coordinates of
Tssr29513 1509 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs214130891
MGI SNP Detail
Chr3:68911759 Ift80 within coordinates of
Tssr29513 1501 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs231284403
MGI SNP Detail
Chr3:68911807 Cpgi13255 within coordinates of
Ift80 within coordinates of
Tssr29513 1453 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263193286
MGI SNP Detail
Chr3:68911932 Cpgi13255 within coordinates of
Rr397713 within coordinates of
Tssr29513 1328 bp upstream
SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs215433840
MGI SNP Detail
Chr3:68911966 Cpgi13255 within coordinates of
Rr397713 within coordinates of
Tssr29513 1294 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A
rs242861109
MGI SNP Detail
Chr3:68911984 Cpgi13255 within coordinates of
Rr397713 within coordinates of
Tssr29513 1276 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260172651
MGI SNP Detail
Chr3:68912055 Cpgi13255 within coordinates of
Rr397713 within coordinates of
Tssr29506 within coordinates of
Tssr29513 1205 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218617261
MGI SNP Detail
Chr3:68912099 Cpgi13255 within coordinates of
Rr397713 within coordinates of
Smc4 within coordinates of
Tssr29513 1161 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235883784
MGI SNP Detail
Chr3:68912119 Cpgi13255 within coordinates of
Rr397713 within coordinates of
Smc4 within coordinates of
Tssr29513 1141 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A G A A A A A A A A A A A
rs250543464
MGI SNP Detail
Chr3:68912161 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 1099 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T
rs219404932
MGI SNP Detail
Chr3:68912261 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 999 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246543219
MGI SNP Detail
Chr3:68912494 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 766 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs265541127
MGI SNP Detail
Chr3:68912650 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 610 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs234070865
MGI SNP Detail
Chr3:68912750 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 510 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs250474702
MGI SNP Detail
Chr3:68912786 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29511 within coordinates of
Tssr29513 474 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257084372
MGI SNP Detail
Chr3:68912818 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29511 within coordinates of
Tssr29513 442 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs224566636
MGI SNP Detail
Chr3:68912865 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 395 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs246039859
MGI SNP Detail
Chr3:68912964 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 296 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C C C C C C
rs257926394
MGI SNP Detail
Chr3:68913054 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 206 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229765625
MGI SNP Detail
Chr3:68913125 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 135 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T T T T T A T T T T
rs252818589
MGI SNP Detail
Chr3:68913146 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 114 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G
rs215867015
MGI SNP Detail
Chr3:68913158 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 102 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs240110428
MGI SNP Detail
Chr3:68913350 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 71 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs246580560
MGI SNP Detail
Chr3:68913579 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 300 bp downstream
SNP A/G/T A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A G A A A A
rs51236881
MGI SNP Detail
Chr3:68913586 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 307 bp downstream
SNP C/T T T T C
rs229883764
MGI SNP Detail
Chr3:68913625 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 346 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs50589764
MGI SNP Detail
Chr3:68913657 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 378 bp downstream
SNP G/T T T T G
rs30017994
MGI SNP Detail
Chr3:68913667 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 388 bp downstream
SNP A/G G A G A A A G
rs241144932
MGI SNP Detail
Chr3:68913693 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 414 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258745716
MGI SNP Detail
Chr3:68913718 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 439 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs227373414
MGI SNP Detail
Chr3:68913759 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 480 bp downstream
Tssr33522 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs51977909
MGI SNP Detail
Chr3:68913795 Cpgi13255 within coordinates of
Smc4 within coordinates of
Tssr29513 516 bp downstream
SNP A/G G G G A
rs247713329
MGI SNP Detail
Chr3:68913856 Smc4 within coordinates of
Tssr29513 577 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G A G G G G G G A G G G G G G G A G G G G
rs256955316
MGI SNP Detail
Chr3:68913857 Smc4 within coordinates of
Tssr29513 578 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs218359500
MGI SNP Detail
Chr3:68914041 Smc4 within coordinates of
Tssr29513 762 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs240015672
MGI SNP Detail
Chr3:68914084 Smc4 within coordinates of
Tssr29513 805 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46279061
MGI SNP Detail
Chr3:68914085 Smc4 within coordinates of
Tssr29513 806 bp downstream
SNP A/G G G A
rs257879004
MGI SNP Detail
Chr3:68914089 Smc4 within coordinates of
Tssr29513 810 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs30304479
MGI SNP Detail
Chr3:68914091 Smc4 within coordinates of
Tssr29513 812 bp downstream
SNP G/T G T T G
rs257823229
MGI SNP Detail
Chr3:68914102 Smc4 within coordinates of
Tssr29513 823 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs49011085
MGI SNP Detail
Chr3:68914105 Smc4 within coordinates of
Tssr29513 826 bp downstream
SNP C/T T T C
rs234707300
MGI SNP Detail
Chr3:68914128 Smc4 within coordinates of
Tssr29513 849 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs49528595
MGI SNP Detail
Chr3:68914130 Smc4 within coordinates of
Tssr29513 851 bp downstream
SNP C/G C C G
rs212666855
MGI SNP Detail
Chr3:68914177 Smc4 within coordinates of
Tssr29513 898 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs229828408
MGI SNP Detail
Chr3:68914257 Smc4 within coordinates of
Tssr29513 978 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244486236
MGI SNP Detail
Chr3:68914437 Smc4 within coordinates of
Tssr29513 1158 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs214149297
MGI SNP Detail
Chr3:68914468 Smc4 within coordinates of
Tssr29513 1189 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238703213
MGI SNP Detail
Chr3:68914569 Smc4 within coordinates of
Tssr29513 1290 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262937779
MGI SNP Detail
Chr3:68914707 Smc4 within coordinates of
Tssr29513 1428 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs226744581
MGI SNP Detail
Chr3:68914715 Smc4 within coordinates of
Tssr29513 1436 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G
rs242186502
MGI SNP Detail
Chr3:68914856 Smc4 within coordinates of
Tssr29513 1577 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs250593169
MGI SNP Detail
Chr3:68914920 Smc4 within coordinates of
Tssr29513 1641 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs218325454
MGI SNP Detail
Chr3:68914936 Smc4 within coordinates of
Tssr29513 1657 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs239976402
MGI SNP Detail
Chr3:68914998 Smc4 within coordinates of
Tssr29513 1719 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257843714
MGI SNP Detail
Chr3:68915022 Smc4 within coordinates of
Tssr29513 1743 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs225649462
MGI SNP Detail
Chr3:68915045 Smc4 within coordinates of
Tssr29513 1766 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T T T T T T T T T
rs245873741
MGI SNP Detail
Chr3:68915094 Smc4 within coordinates of
Tssr29513 1815 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs266245856
MGI SNP Detail
Chr3:68915242 Smc4 within coordinates of
Tssr29513 1963 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
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Showing SNP(s) 1 - 68 of 68

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory