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Mouse SNP Summary
Symbol
Name
ID 		Tssr30404
transcription start site region 30404
MGI:5958171

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240920255
MGI SNP Detail		 Chr3:93352748 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1932 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258762386
MGI SNP Detail		 Chr3:93352762 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30396 within coordinates of
Tssr30404 1918 bp upstream
Tssr34371 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232124624
MGI SNP Detail		 Chr3:93352812 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1868 bp upstream
Tssr34371 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254947226
MGI SNP Detail		 Chr3:93352874 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1806 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262645749
MGI SNP Detail		 Chr3:93352910 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30399 within coordinates of
Tssr30404 1770 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580147563
MGI SNP Detail		 Chr3:93353030 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1650 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs583559810
MGI SNP Detail		 Chr3:93353064 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1616 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585809831
MGI SNP Detail		 Chr3:93353218 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1462 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580082930
MGI SNP Detail		 Chr3:93353252 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1428 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs583417391
MGI SNP Detail		 Chr3:93353278 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1402 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs227867603
MGI SNP Detail		 Chr3:93353437 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1243 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G G A A A A A G G G A A A A A G A A A
rs242932763
MGI SNP Detail		 Chr3:93353465 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1215 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs216575571
MGI SNP Detail		 Chr3:93353492 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1188 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33030007
MGI SNP Detail		 Chr3:93353584 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1096 bp upstream
 SNP A/T T T T T T T T T T A T T A T
rs245267516
MGI SNP Detail		 Chr3:93353589 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1091 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217250677
MGI SNP Detail		 Chr3:93353606 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 1074 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236318110
MGI SNP Detail		 Chr3:93353730 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 950 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262492463
MGI SNP Detail		 Chr3:93353840 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 840 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A G A A A A
rs586747391
MGI SNP Detail		 Chr3:93353926 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 754 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs579536304
MGI SNP Detail		 Chr3:93353968 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 712 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs583821071
MGI SNP Detail		 Chr3:93353982 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 698 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs587390762
MGI SNP Detail		 Chr3:93353985 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 695 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs581253017
MGI SNP Detail		 Chr3:93354015 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 665 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584804964
MGI SNP Detail		 Chr3:93354022 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 658 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs587331605
MGI SNP Detail		 Chr3:93354033 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 647 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs581182503
MGI SNP Detail		 Chr3:93354051 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 629 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T
rs584597762
MGI SNP Detail		 Chr3:93354069 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 611 bp upstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs578480014
MGI SNP Detail		 Chr3:93354087 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 593 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs581807673
MGI SNP Detail		 Chr3:93354094 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 586 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs584911177
MGI SNP Detail		 Chr3:93354112 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 568 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A G A A A A
rs579176407
MGI SNP Detail		 Chr3:93354122 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 558 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G G G G
rs582633552
MGI SNP Detail		 Chr3:93354267 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 413 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs586214787
MGI SNP Detail		 Chr3:93354322 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 358 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs580187451
MGI SNP Detail		 Chr3:93354349 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 331 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs582369271
MGI SNP Detail		 Chr3:93354421 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 259 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs585712478
MGI SNP Detail		 Chr3:93354601 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 79 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs212171519
MGI SNP Detail		 Chr3:93354611 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 69 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs230875220
MGI SNP Detail		 Chr3:93354687 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 within coordinates of
Tssr34373 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs254691830
MGI SNP Detail		 Chr3:93354881 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 193 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs223730138
MGI SNP Detail		 Chr3:93355097 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Gm66249 within coordinates of
Tchh within coordinates of
Tssr30404 409 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30707656
MGI SNP Detail		 Chr3:93355277 Cpgi13475 within coordinates of
Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 589 bp downstream
 SNP A/G G A A
rs259879168
MGI SNP Detail		 Chr3:93355444 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 756 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs222640769
MGI SNP Detail		 Chr3:93355526 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 838 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242694350
MGI SNP Detail		 Chr3:93355552 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 864 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs265204254
MGI SNP Detail		 Chr3:93355608 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 920 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs223259675
MGI SNP Detail		 Chr3:93355757 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 1069 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236499457
MGI SNP Detail		 Chr3:93355798 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 1110 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258820308
MGI SNP Detail		 Chr3:93355850 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 1162 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229164032
MGI SNP Detail		 Chr3:93355881 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 1193 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs245233266
MGI SNP Detail		 Chr3:93355894 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 1206 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216594308
MGI SNP Detail		 Chr3:93355927 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 1239 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs230203034
MGI SNP Detail		 Chr3:93356229 Gm37245 within coordinates of
Tchh within coordinates of
Tssr30404 1541 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs33030011
MGI SNP Detail		 Chr3:93356444 Gm37245 within coordinates of
Tssr30404 1756 bp downstream
 SNP A/G G G G G G G G G A G G A
rs582956115
MGI SNP Detail		 Chr3:93356506 Gm37245 within coordinates of
Tssr30404 1818 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs212375160
MGI SNP Detail		 Chr3:93356567 Gm37245 within coordinates of
Tssr30404 1879 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
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Showing SNP(s) 1 - 55 of 55
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/10/2024
MGI 6.24 		The Jackson Laboratory
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