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Mouse SNP Summary
Symbol
Name
ID 		Tssr30946
transcription start site region 30946
MGI:5958713

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Showing SNP(s) 1 - 59 of 59

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs47131721
MGI SNP Detail		 Chr3:102901165 Tssr30946 1950 bp upstream
 SNP C/T T T T T T T C T T T T T
rs255589699
MGI SNP Detail		 Chr3:102901176 Tssr30946 1939 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs217045301
MGI SNP Detail		 Chr3:102901288 Tssr30946 1827 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs240348329
MGI SNP Detail		 Chr3:102901289 Tssr30946 1826 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs261143060
MGI SNP Detail		 Chr3:102901404 Tssr30946 1711 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579785864
MGI SNP Detail		 Chr3:102901554 Tssr30946 1561 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs29999849
MGI SNP Detail		 Chr3:102901623 Tssr30946 1492 bp upstream
 SNP A/C A A C C A C
rs30509364
MGI SNP Detail		 Chr3:102901626 Tssr30946 1489 bp upstream
 SNP A/C A A C A
rs586551832
MGI SNP Detail		 Chr3:102901627 Tssr30946 1488 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A
rs217024575
MGI SNP Detail		 Chr3:102901677 Tssr30946 1438 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235257071
MGI SNP Detail		 Chr3:102901745 Tssr30946 1370 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250132742
MGI SNP Detail		 Chr3:102901757 Tssr30946 1358 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217936956
MGI SNP Detail		 Chr3:102901844 Tssr30946 1271 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs243814942
MGI SNP Detail		 Chr3:102901969 Tssr30946 1146 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261898289
MGI SNP Detail		 Chr3:102902009 Tssr30946 1106 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs224807653
MGI SNP Detail		 Chr3:102902117 Tssr30946 998 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs46415048
MGI SNP Detail		 Chr3:102902179 Tssr30946 936 bp upstream
 SNP C/G C C G C C C G G C C C G C C G G G
rs52010689
MGI SNP Detail		 Chr3:102902231 Tssr30946 884 bp upstream
 SNP A/G G G G G A G G G G G G G
rs228451366
MGI SNP Detail		 Chr3:102902234 Tssr30946 881 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs236747064
MGI SNP Detail		 Chr3:102902417 Tssr30946 698 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253994380
MGI SNP Detail		 Chr3:102902438 Tssr30946 677 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs226171421
MGI SNP Detail		 Chr3:102902462 Tssr30946 653 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250854292
MGI SNP Detail		 Chr3:102902574 Rr582293 within coordinates of
Tssr30946 541 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217383762
MGI SNP Detail		 Chr3:102902697 Rr582293 within coordinates of
Tssr30946 418 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs231866325
MGI SNP Detail		 Chr3:102902703 Rr582293 within coordinates of
Tssr30946 412 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260505776
MGI SNP Detail		 Chr3:102902726 Rr582293 within coordinates of
Tssr30946 389 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs216994449
MGI SNP Detail		 Chr3:102902835 Rr397897 within coordinates of
Rr582293 within coordinates of
Tssr30946 280 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231176734
MGI SNP Detail		 Chr3:102903018 Cpgi13629 within coordinates of
Rr397897 within coordinates of
Rr582293 within coordinates of
Tssr30946 97 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs250014945
MGI SNP Detail		 Chr3:102903046 Cpgi13629 within coordinates of
Rr397897 within coordinates of
Rr582293 within coordinates of
Tssr30945 within coordinates of
Tssr30946 69 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs211712932
MGI SNP Detail		 Chr3:102903070 Cpgi13629 within coordinates of
Rr397897 within coordinates of
Rr582293 within coordinates of
Sike1 within coordinates of
Tssr30945 within coordinates of
Tssr30946 45 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T G T T T T T T G T T T T T T T G T T T T
rs238698058
MGI SNP Detail		 Chr3:102903099 Cpgi13629 within coordinates of
Rr397897 within coordinates of
Rr582293 within coordinates of
Sike1 within coordinates of
Tssr30945 within coordinates of
Tssr30946 16 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256824715
MGI SNP Detail		 Chr3:102903262 Cpgi13629 within coordinates of
Sike1 within coordinates of
Tssr30946 136 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs224967705
MGI SNP Detail		 Chr3:102903271 Cpgi13629 within coordinates of
Sike1 within coordinates of
Tssr30946 145 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs6314877
MGI SNP Detail		 Chr3:102903316 Cpgi13629 within coordinates of
Sike1 within coordinates of
Tssr30946 190 bp downstream
 SNP A/G G A
rs253100578
MGI SNP Detail		 Chr3:102903774 Sike1 within coordinates of
Tssr30946 648 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6317839
MGI SNP Detail		 Chr3:102903852 Sike1 within coordinates of
Tssr30946 726 bp downstream
 SNP C/T C T
rs236634405
MGI SNP Detail		 Chr3:102903871 Sike1 within coordinates of
Tssr30946 745 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs253895723
MGI SNP Detail		 Chr3:102903878 Sike1 within coordinates of
Tssr30946 752 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223452611
MGI SNP Detail		 Chr3:102903897 Sike1 within coordinates of
Tssr30946 771 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs246057245
MGI SNP Detail		 Chr3:102903935 Sike1 within coordinates of
Tssr30946 809 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263712429
MGI SNP Detail		 Chr3:102904013 Sike1 within coordinates of
Tssr30946 887 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs232378659
MGI SNP Detail		 Chr3:102904014 Sike1 within coordinates of
Tssr30946 888 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254955835
MGI SNP Detail		 Chr3:102904157 Sike1 within coordinates of
Tssr30946 1031 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260826860
MGI SNP Detail		 Chr3:102904158 Sike1 within coordinates of
Tssr30946 1032 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs225254813
MGI SNP Detail		 Chr3:102904164 Sike1 within coordinates of
Tssr30946 1038 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243834190
MGI SNP Detail		 Chr3:102904194 Sike1 within coordinates of
Tssr30946 1068 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214770203
MGI SNP Detail		 Chr3:102904321 Sike1 within coordinates of
Tssr30946 1195 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580887445
MGI SNP Detail		 Chr3:102904342 Sike1 within coordinates of
Tssr30946 1216 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236652484
MGI SNP Detail		 Chr3:102904398 Sike1 within coordinates of
Tssr30946 1272 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254895819
MGI SNP Detail		 Chr3:102904422 Sike1 within coordinates of
Tssr30946 1296 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216387838
MGI SNP Detail		 Chr3:102904494 Sike1 within coordinates of
Tssr30946 1368 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs239738582
MGI SNP Detail		 Chr3:102904527 Sike1 within coordinates of
Tssr30946 1401 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253023535
MGI SNP Detail		 Chr3:102904593 Sike1 within coordinates of
Tssr30946 1467 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221858637
MGI SNP Detail		 Chr3:102904748 Sike1 within coordinates of
Tssr30946 1622 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230603709
MGI SNP Detail		 Chr3:102904777 Sike1 within coordinates of
Tssr30946 1651 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248116245
MGI SNP Detail		 Chr3:102904814 Sike1 within coordinates of
Tssr30946 1688 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs223167631
MGI SNP Detail		 Chr3:102904869 Sike1 within coordinates of
Tssr30946 1743 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243235398
MGI SNP Detail		 Chr3:102904903 Sike1 within coordinates of
Tssr30946 1777 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265741749
MGI SNP Detail		 Chr3:102905052 Sike1 within coordinates of
Tssr30946 1926 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
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Showing SNP(s) 1 - 59 of 59
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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