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Mouse SNP Summary
Symbol
Name
ID 		Tssr33366
transcription start site region 33366
MGI:5961133

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263439738
MGI SNP Detail
Alliance Variant		 Chr3:58597480 Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1949 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C C C C C C G C C C C C C C C C C C C
rs231881939
MGI SNP Detail
Alliance Variant		 Chr3:58597491 Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1938 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243705094
MGI SNP Detail
Alliance Variant		 Chr3:58597680 Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1749 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C T C C C C
rs6389932
MGI SNP Detail
Alliance Variant		 Chr3:58597748 Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1681 bp downstream
 SNP A/G A G
rs257257976
MGI SNP Detail
Alliance Variant		 Chr3:58597757 Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1672 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587077587
MGI SNP Detail
Alliance Variant		 Chr3:58597762 Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1667 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs226133874
MGI SNP Detail
Alliance Variant		 Chr3:58597843 Rr577266 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1586 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs244652727
MGI SNP Detail
Alliance Variant		 Chr3:58597876 Rr577266 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1553 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256279020
MGI SNP Detail
Alliance Variant		 Chr3:58597948 Rr577266 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1481 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs6391526
MGI SNP Detail
Alliance Variant		 Chr3:58598016 Rr577266 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1413 bp downstream
 SNP C/T T C C C C
rs259514117
MGI SNP Detail
Alliance Variant		 Chr3:58598037 Rr577266 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1392 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216872612
MGI SNP Detail
Alliance Variant		 Chr3:58598116 Rr367441 within coordinates of
Rr577266 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1313 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs6392131
MGI SNP Detail
Alliance Variant		 Chr3:58598164 Cpgi13205 within coordinates of
Rr367441 within coordinates of
Rr577266 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1265 bp downstream
 SNP G/T G T
rs244607140
MGI SNP Detail
Alliance Variant		 Chr3:58598265 Cpgi13205 within coordinates of
Rr577266 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1164 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs213754259
MGI SNP Detail
Alliance Variant		 Chr3:58598302 Cpgi13205 within coordinates of
Rr577266 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1127 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230688727
MGI SNP Detail
Alliance Variant		 Chr3:58598311 Cpgi13205 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1118 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T T C T T T C T T C T T T T
rs248184436
MGI SNP Detail
Alliance Variant		 Chr3:58598321 Cpgi13205 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1108 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs227131208
MGI SNP Detail
Alliance Variant		 Chr3:58598344 Cpgi13205 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 1085 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs239331320
MGI SNP Detail
Alliance Variant		 Chr3:58598497 Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 932 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs580950780
MGI SNP Detail
Alliance Variant		 Chr3:58598548 Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 881 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs52245326
MGI SNP Detail
Alliance Variant		 Chr3:58598650 Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Tssr33366 779 bp downstream
 SNP C/G C C C G G C C C G C G G C G G G
rs263290276
MGI SNP Detail
Alliance Variant		 Chr3:58598813 Cpgi13206 within coordinates of
Siah2 Intron
Siah2 Noncoding-Transcript-Variant
Siah2 Splice-Site
Tssr33366 616 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs223971224
MGI SNP Detail
Alliance Variant		 Chr3:58599040 Cpgi13206 within coordinates of
Siah2 Coding-NonSynonymous
Siah2 Noncoding-Transcript-Variant
Tssr33366 389 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T C T T T T T T C T T T C T T T C T T T T
rs246650524
MGI SNP Detail
Alliance Variant		 Chr3:58599060 Cpgi13206 within coordinates of
Siah2 Coding-Synonymous
Siah2 Noncoding-Transcript-Variant
Tssr33366 369 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs586805673
MGI SNP Detail
Alliance Variant		 Chr3:58599114 Cpgi13206 within coordinates of
Siah2 Coding-Synonymous
Siah2 Noncoding-Transcript-Variant
Tssr33366 315 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257220624
MGI SNP Detail
Alliance Variant		 Chr3:58599232 Cpgi13206 within coordinates of
Siah2 Coding-NonSynonymous
Siah2 Noncoding-Transcript-Variant
Tssr33366 197 bp downstream
 SNP C/T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218615256
MGI SNP Detail
Alliance Variant		 Chr3:58599489 Cpgi13206 within coordinates of
Siah2 mRNA-UTR
Siah2 Noncoding-Transcript-Variant
Tssr33366 53 bp upstream
Tssr33367 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs387035558
MGI SNP Detail
Alliance Variant		 Chr3:58599535 Cpgi13206 within coordinates of
Siah2 mRNA-UTR
Siah2 Noncoding-Transcript-Variant
Tssr33366 99 bp upstream
Tssr33367 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G
rs238340322
MGI SNP Detail
Alliance Variant		 Chr3:58599657 Cpgi13206 within coordinates of
Siah2 mRNA-UTR
Siah2 Noncoding-Transcript-Variant
Tssr33366 221 bp upstream
 SNP C/T C T
rs256342361
MGI SNP Detail
Alliance Variant		 Chr3:58599725 Cpgi13206 within coordinates of
Siah2 mRNA-UTR
Siah2 Noncoding-Transcript-Variant
Tssr33366 289 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G G G G G G
rs260804958
MGI SNP Detail
Alliance Variant		 Chr3:58599745 Cpgi13206 within coordinates of
Siah2 mRNA-UTR
Siah2 Noncoding-Transcript-Variant
Tssr33366 309 bp upstream
 SNP A/G A G
rs254157529
MGI SNP Detail
Alliance Variant		 Chr3:58599758 Cpgi13206 within coordinates of
Siah2 mRNA-UTR
Siah2 Noncoding-Transcript-Variant
Tssr33366 322 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs265793058
MGI SNP Detail		 Chr3:58599873 Cpgi13206 within coordinates of
Rr577270 within coordinates of
Tssr33366 437 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs231798250
MGI SNP Detail		 Chr3:58599888 Cpgi13206 within coordinates of
Rr577270 within coordinates of
Tssr33366 452 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G T G G T G G G G G G G G G T G G G G G G G G G G G G
rs244745560
MGI SNP Detail		 Chr3:58599940 Cpgi13206 within coordinates of
Rr577270 within coordinates of
Tssr29217 within coordinates of
Tssr33366 504 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs213715755
MGI SNP Detail		 Chr3:58599957 Cpgi13206 within coordinates of
Rr577270 within coordinates of
Tssr29217 within coordinates of
Tssr33366 521 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs229394078
MGI SNP Detail		 Chr3:58599971 Cpgi13206 within coordinates of
Rr577270 within coordinates of
Tssr33366 535 bp upstream
 SNP C C C
rs242404133
MGI SNP Detail		 Chr3:58600049 4930593A02Rik within coordinates of
Cpgi13206 within coordinates of
Rr577270 within coordinates of
Tssr33366 613 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs219122828
MGI SNP Detail		 Chr3:58600050 4930593A02Rik within coordinates of
Cpgi13206 within coordinates of
Rr577270 within coordinates of
Tssr33366 614 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs242091413
MGI SNP Detail		 Chr3:58600055 4930593A02Rik within coordinates of
Cpgi13206 within coordinates of
Rr577271 within coordinates of
Tssr33366 619 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs259310200
MGI SNP Detail		 Chr3:58600129 4930593A02Rik within coordinates of
Cpgi13206 within coordinates of
Rr577271 within coordinates of
Tssr33366 693 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224098151
MGI SNP Detail		 Chr3:58600135 4930593A02Rik within coordinates of
Cpgi13206 within coordinates of
Rr577271 within coordinates of
Tssr33366 699 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs232511431
MGI SNP Detail		 Chr3:58600163 4930593A02Rik within coordinates of
Cpgi13206 within coordinates of
Rr577271 within coordinates of
Tssr33366 727 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250970917
MGI SNP Detail		 Chr3:58600164 4930593A02Rik within coordinates of
Cpgi13206 within coordinates of
Rr577271 within coordinates of
Tssr33366 728 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs218670349
MGI SNP Detail		 Chr3:58600337 4930593A02Rik within coordinates of
Cpgi13206 within coordinates of
Rr577271 within coordinates of
Tssr33366 901 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs236832404
MGI SNP Detail		 Chr3:58600422 4930593A02Rik within coordinates of
Rr577271 within coordinates of
Tssr33366 986 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs261030684
MGI SNP Detail		 Chr3:58600428 4930593A02Rik within coordinates of
Rr577271 within coordinates of
Tssr33366 992 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs227125508
MGI SNP Detail		 Chr3:58600532 4930593A02Rik within coordinates of
Rr577271 within coordinates of
Tssr33366 1096 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs250693446
MGI SNP Detail		 Chr3:58600696 4930593A02Rik within coordinates of
Rr577271 within coordinates of
Tssr33366 1260 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G A G G G G
rs584830382
MGI SNP Detail		 Chr3:58600745 4930593A02Rik within coordinates of
Rr577271 within coordinates of
Tssr33366 1309 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263764234
MGI SNP Detail		 Chr3:58600769 4930593A02Rik within coordinates of
Rr577271 within coordinates of
Tssr33366 1333 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs232506285
MGI SNP Detail		 Chr3:58600870 4930593A02Rik within coordinates of
Tssr33366 1434 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579162688
MGI SNP Detail		 Chr3:58600913 4930593A02Rik within coordinates of
Tssr33366 1477 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs238658983
MGI SNP Detail		 Chr3:58600939 4930593A02Rik within coordinates of
Tssr33366 1503 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255550628
MGI SNP Detail		 Chr3:58601017 4930593A02Rik within coordinates of
Tssr33366 1581 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G
rs224614126
MGI SNP Detail		 Chr3:58601083 4930593A02Rik within coordinates of
Tssr33366 1647 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C T C C C C C C T C C C C C C C T C C C C
rs242368150
MGI SNP Detail		 Chr3:58601188 4930593A02Rik within coordinates of
Tssr33366 1752 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C C C C C A C C C C
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Showing SNP(s) 1 - 57 of 57
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory