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Mouse SNP Summary
Symbol
Name
ID
Tssr34021
transcription start site region 34021
MGI:5961788

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217370847
MGI SNP Detail
Chr3:88358803 Sema4a within coordinates of
Tssr34021 1977 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236502152
MGI SNP Detail
Chr3:88358922 Sema4a within coordinates of
Tssr34021 1858 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216718197
MGI SNP Detail
Chr3:88359097 Sema4a within coordinates of
Tssr34021 1683 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240197641
MGI SNP Detail
Chr3:88359136 Sema4a within coordinates of
Tssr34021 1644 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs258004108
MGI SNP Detail
Chr3:88359162 Sema4a within coordinates of
Tssr34021 1618 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219622413
MGI SNP Detail
Chr3:88359163 Sema4a within coordinates of
Tssr34021 1617 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs32887052
MGI SNP Detail
Chr3:88359218 Sema4a within coordinates of
Tssr34021 1562 bp downstream
SNP A/G A A A A A A A A A A A A G A
rs248562786
MGI SNP Detail
Chr3:88359249 Sema4a within coordinates of
Tssr34021 1531 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs223080839
MGI SNP Detail
Chr3:88359260 Sema4a within coordinates of
Tssr34021 1520 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247044104
MGI SNP Detail
Chr3:88359291 Sema4a within coordinates of
Tssr34021 1489 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs265631077
MGI SNP Detail
Chr3:88359295 Sema4a within coordinates of
Tssr34021 1485 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs231322151
MGI SNP Detail
Chr3:88359297 Sema4a within coordinates of
Tssr34021 1483 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs246630506
MGI SNP Detail
Chr3:88359321 Sema4a within coordinates of
Tssr34021 1459 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs257300314
MGI SNP Detail
Chr3:88359508 Sema4a within coordinates of
Tssr34021 1272 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224892724
MGI SNP Detail
Chr3:88359783 Rr579760 within coordinates of
Sema4a within coordinates of
Tssr34021 997 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243400697
MGI SNP Detail
Chr3:88359841 Sema4a within coordinates of
Tssr34021 939 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs217436264
MGI SNP Detail
Chr3:88359851 Sema4a within coordinates of
Tssr34021 929 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583820878
MGI SNP Detail
Chr3:88359963 Sema4a within coordinates of
Tssr34021 817 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234048989
MGI SNP Detail
Chr3:88360157 Sema4a within coordinates of
Tssr34021 623 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs253101975
MGI SNP Detail
Chr3:88360285 Sema4a within coordinates of
Tssr34021 495 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs217271352
MGI SNP Detail
Chr3:88360287 Sema4a within coordinates of
Tssr34021 493 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs32887885
MGI SNP Detail
Chr3:88360466 Sema4a within coordinates of
Tssr34021 314 bp downstream
SNP A/C A A A A A A A A A A C
rs250675802
MGI SNP Detail
Chr3:88360507 Sema4a within coordinates of
Tssr34021 273 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213801778
MGI SNP Detail
Chr3:88360541 Sema4a within coordinates of
Tssr34021 239 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587275448
MGI SNP Detail
Chr3:88360548 Sema4a within coordinates of
Tssr34021 232 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230998490
MGI SNP Detail
Chr3:88360551 Sema4a within coordinates of
Tssr34021 229 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs248426023
MGI SNP Detail
Chr3:88360558 Sema4a within coordinates of
Tssr34021 222 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222931786
MGI SNP Detail
Chr3:88360564 Sema4a within coordinates of
Tssr34021 216 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs250662073
MGI SNP Detail
Chr3:88360568 Sema4a within coordinates of
Tssr34021 212 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T C T T T T
rs259804736
MGI SNP Detail
Chr3:88360603 Sema4a within coordinates of
Tssr34021 177 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs223812902
MGI SNP Detail
Chr3:88360606 Sema4a within coordinates of
Tssr34021 174 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243713192
MGI SNP Detail
Chr3:88360649 Sema4a within coordinates of
Tssr34021 131 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257364793
MGI SNP Detail
Chr3:88360665 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 115 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218656480
MGI SNP Detail
Chr3:88360825 Rr367457 within coordinates of
Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 39 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236920155
MGI SNP Detail
Chr3:88361016 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 230 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261180405
MGI SNP Detail
Chr3:88361070 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 284 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs232971447
MGI SNP Detail
Chr3:88361126 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 340 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs258247229
MGI SNP Detail
Chr3:88361256 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 470 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs263154802
MGI SNP Detail
Chr3:88361367 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 581 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs232272820
MGI SNP Detail
Chr3:88361428 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 642 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs244619505
MGI SNP Detail
Chr3:88361432 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 646 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213860646
MGI SNP Detail
Chr3:88361433 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 647 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs580427157
MGI SNP Detail
Chr3:88361474 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 688 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G T G G G G G G G T G G G G G G G G G G G G G T G G G G G T
rs582743604
MGI SNP Detail
Chr3:88361492 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 706 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32887888
MGI SNP Detail
Chr3:88361507 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 721 bp upstream
SNP C/T C C C C C C C C C T C
rs230881296
MGI SNP Detail
Chr3:88361574 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 788 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs242444916
MGI SNP Detail
Chr3:88361652 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 866 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs219458382
MGI SNP Detail
Chr3:88361658 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 872 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs239748836
MGI SNP Detail
Chr3:88361683 Rr579761 within coordinates of
Sema4a within coordinates of
Tssr34021 897 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs263584449
MGI SNP Detail
Chr3:88362098 Sema4a within coordinates of
Tssr34021 1312 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224554435
MGI SNP Detail
Chr3:88362119 Sema4a within coordinates of
Tssr34021 1333 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs238754210
MGI SNP Detail
Chr3:88362254 Sema4a within coordinates of
Tssr34021 1468 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250920727
MGI SNP Detail
Chr3:88362270 Sema4a within coordinates of
Tssr29951 within coordinates of
Tssr34021 1484 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs218540813
MGI SNP Detail
Chr3:88362271 Sema4a within coordinates of
Tssr29951 within coordinates of
Tssr34021 1485 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs236984077
MGI SNP Detail
Chr3:88362290 Sema4a within coordinates of
Tssr34021 1504 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261070745
MGI SNP Detail
Chr3:88362300 Sema4a within coordinates of
Tssr34021 1514 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs226080088
MGI SNP Detail
Chr3:88362330 Sema4a within coordinates of
Tssr34021 1544 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs246235344
MGI SNP Detail
Chr3:88362336 Sema4a within coordinates of
Tssr34021 1550 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs265508382
MGI SNP Detail
Chr3:88362389 Sema4a within coordinates of
Tssr34021 1603 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs230871902
MGI SNP Detail
Chr3:88362390 Sema4a within coordinates of
Tssr34021 1604 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243757567
MGI SNP Detail
Chr3:88362405 Sema4a within coordinates of
Tssr34021 1619 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255502359
MGI SNP Detail
Chr3:88362466 Sema4a within coordinates of
Tssr34021 1680 bp upstream
Tssr34024 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs224432549
MGI SNP Detail
Chr3:88362481 Sema4a within coordinates of
Tssr34021 1695 bp upstream
Tssr34025 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T T T
rs242502978
MGI SNP Detail
Chr3:88362487 Sema4a within coordinates of
Tssr34021 1701 bp upstream
Tssr34025 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs219439616
MGI SNP Detail
Chr3:88362686 Sema4a within coordinates of
Tssr34021 1900 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
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Showing SNP(s) 1 - 65 of 65

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory