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Mouse SNP Summary
Symbol
Name
ID 		Tssr34190
transcription start site region 34190
MGI:5961957

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Showing SNP(s) 1 - 54 of 54

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256569756
MGI SNP Detail		 Chr3:89957890 Tssr34190 1880 bp downstream
Ubap2l within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs218253523
MGI SNP Detail		 Chr3:89957918 Tssr34190 1852 bp downstream
Ubap2l within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235522692
MGI SNP Detail		 Chr3:89958267 Tssr34190 1503 bp downstream
Ubap2l within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs221470718
MGI SNP Detail		 Chr3:89958569 Tssr34190 1201 bp downstream
Ubap2l within coordinates of
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245408193
MGI SNP Detail		 Chr3:89958581 Tssr34190 1189 bp downstream
Ubap2l within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs262545725
MGI SNP Detail		 Chr3:89958782 Rr375341 within coordinates of
Rr580267 within coordinates of
Tssr34190 988 bp downstream
Ubap2l within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222743621
MGI SNP Detail		 Chr3:89958861 Rr375341 within coordinates of
Rr580267 within coordinates of
Tssr30147 within coordinates of
Tssr34190 909 bp downstream
Ubap2l within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs244827651
MGI SNP Detail		 Chr3:89958873 Rr375341 within coordinates of
Rr580267 within coordinates of
Tssr34190 897 bp downstream
Ubap2l within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261415729
MGI SNP Detail		 Chr3:89959140 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580268 within coordinates of
Tssr34190 630 bp downstream
Ubap2l within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229174014
MGI SNP Detail		 Chr3:89959281 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580268 within coordinates of
Tssr34190 489 bp downstream
Ubap2l within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241953113
MGI SNP Detail		 Chr3:89959283 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580268 within coordinates of
Tssr34190 487 bp downstream
Ubap2l within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs259935738
MGI SNP Detail		 Chr3:89959319 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580268 within coordinates of
Tssr34190 451 bp downstream
Ubap2l within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs30053809
MGI SNP Detail		 Chr3:89959401 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580268 within coordinates of
Tssr34190 369 bp downstream
Ubap2l within coordinates of
 SNP A/G A A G A G
rs251236581
MGI SNP Detail		 Chr3:89959531 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580268 within coordinates of
Tssr34190 239 bp downstream
Ubap2l within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs213872928
MGI SNP Detail		 Chr3:89959630 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580268 within coordinates of
Tssr34190 140 bp downstream
Ubap2l within coordinates of
 SNP A/G A A A A A G G A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A G A A A A A A A A
rs228465782
MGI SNP Detail		 Chr3:89959856 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr34190 28 bp upstream
Ubap2l within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C A C C C C C C C C C C C
rs254489804
MGI SNP Detail		 Chr3:89960012 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr34190 184 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs212382072
MGI SNP Detail		 Chr3:89960016 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr34190 188 bp upstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs235453927
MGI SNP Detail		 Chr3:89960046 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr34190 218 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs252877218
MGI SNP Detail		 Chr3:89960049 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr34190 221 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C T C C C C C C T C C C C C C C C C C C
rs216316310
MGI SNP Detail		 Chr3:89960095 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr34190 267 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs240001434
MGI SNP Detail		 Chr3:89960120 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr34190 292 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs257947874
MGI SNP Detail		 Chr3:89960159 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr30149 within coordinates of
Tssr34190 331 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222275714
MGI SNP Detail		 Chr3:89960160 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr30149 within coordinates of
Tssr34190 332 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs242412869
MGI SNP Detail		 Chr3:89960175 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Rr375341 within coordinates of
Rr580270 within coordinates of
Tssr34190 347 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259897216
MGI SNP Detail		 Chr3:89960282 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Gm53012 within coordinates of
Rr375341 within coordinates of
Tssr34190 454 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T T T T T T T T G T T T T
rs231632516
MGI SNP Detail		 Chr3:89960297 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Gm53012 within coordinates of
Rr375341 within coordinates of
Tssr34190 469 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs246467032
MGI SNP Detail		 Chr3:89960356 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Gm53012 within coordinates of
Rr375341 within coordinates of
Tssr34190 528 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A A G A A A A A A A A A A A A
rs262213067
MGI SNP Detail		 Chr3:89960443 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Gm53012 within coordinates of
Rr375341 within coordinates of
Tssr34190 615 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs228933971
MGI SNP Detail		 Chr3:89960446 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Gm53012 within coordinates of
Rr375341 within coordinates of
Tssr34190 618 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248936434
MGI SNP Detail		 Chr3:89960457 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Gm53012 within coordinates of
Rr375341 within coordinates of
Tssr34190 629 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217187204
MGI SNP Detail		 Chr3:89960498 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Gm53012 within coordinates of
Rr375341 within coordinates of
Tssr34190 670 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G G G G G G A G
rs229472854
MGI SNP Detail		 Chr3:89960523 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Gm53012 within coordinates of
Rr375341 within coordinates of
Tssr34190 695 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246955032
MGI SNP Detail		 Chr3:89960615 4933434E20Rik within coordinates of
Cpgi13449 within coordinates of
Gm53012 within coordinates of
Tssr34190 787 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs238266159
MGI SNP Detail		 Chr3:89960769 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 941 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs262474442
MGI SNP Detail		 Chr3:89960775 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 947 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs213832428
MGI SNP Detail		 Chr3:89960796 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 968 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237360571
MGI SNP Detail		 Chr3:89960806 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 978 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249781112
MGI SNP Detail		 Chr3:89960930 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1102 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223670378
MGI SNP Detail		 Chr3:89961110 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1282 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A A
rs235390887
MGI SNP Detail		 Chr3:89961143 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1315 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs253503390
MGI SNP Detail		 Chr3:89961161 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1333 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs224119863
MGI SNP Detail		 Chr3:89961305 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1477 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244124187
MGI SNP Detail		 Chr3:89961328 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1500 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265072835
MGI SNP Detail		 Chr3:89961364 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1536 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs221033858
MGI SNP Detail		 Chr3:89961472 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1644 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235637435
MGI SNP Detail		 Chr3:89961478 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1650 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs259588159
MGI SNP Detail		 Chr3:89961512 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1684 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs228121468
MGI SNP Detail		 Chr3:89961545 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1717 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs246915756
MGI SNP Detail		 Chr3:89961660 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1832 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263779758
MGI SNP Detail		 Chr3:89961718 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1890 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs232483672
MGI SNP Detail		 Chr3:89961778 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1950 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs251853685
MGI SNP Detail		 Chr3:89961800 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1972 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs214687431
MGI SNP Detail		 Chr3:89961824 4933434E20Rik within coordinates of
Gm53012 within coordinates of
Tssr34190 1996 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A C A A A C A A A A A A C A A A A A A A C A A A A
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Showing SNP(s) 1 - 54 of 54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory