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Mouse SNP Summary
Symbol
Name
ID 		Tssr35281
transcription start site region 35281
MGI:5963048

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Showing SNP(s) 1 - 73 of 73

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248359418
MGI SNP Detail		 Chr3:115506539 S1pr1 within coordinates of
Tssr35281 1999 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213047340
MGI SNP Detail		 Chr3:115506602 S1pr1 within coordinates of
Tssr35281 1936 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs238219867
MGI SNP Detail		 Chr3:115506619 S1pr1 within coordinates of
Tssr35281 1919 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257928870
MGI SNP Detail		 Chr3:115506857 S1pr1 within coordinates of
Tssr35281 1681 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224244257
MGI SNP Detail		 Chr3:115506991 S1pr1 within coordinates of
Tssr35281 1547 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs245209273
MGI SNP Detail		 Chr3:115507007 S1pr1 within coordinates of
Tssr35281 1531 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs30083416
MGI SNP Detail		 Chr3:115507069 S1pr1 within coordinates of
Tssr35281 1469 bp downstream
 SNP C/G G G G G G G C G G G C G G C G
rs222558186
MGI SNP Detail		 Chr3:115507093 S1pr1 within coordinates of
Tssr35281 1445 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30083418
MGI SNP Detail		 Chr3:115507102 S1pr1 within coordinates of
Tssr35281 1436 bp downstream
 SNP A/G A A A A A A G A A A G A A A
rs30083420
MGI SNP Detail		 Chr3:115507133 S1pr1 within coordinates of
Tssr35281 1405 bp downstream
 SNP A/G A A A A A A G A A A G A A A
rs582064893
MGI SNP Detail		 Chr3:115507236 S1pr1 within coordinates of
Tssr35281 1302 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G A G G G G G G A G G G G G G G G G G G
rs585866257
MGI SNP Detail		 Chr3:115507237 S1pr1 within coordinates of
Tssr35281 1301 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs578360314
MGI SNP Detail		 Chr3:115507247 S1pr1 within coordinates of
Tssr35281 1291 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs228435701
MGI SNP Detail		 Chr3:115507344 S1pr1 within coordinates of
Tssr35281 1194 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245653229
MGI SNP Detail		 Chr3:115507403 S1pr1 within coordinates of
Tssr35281 1135 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs262615068
MGI SNP Detail		 Chr3:115507411 S1pr1 within coordinates of
Tssr35281 1127 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231700957
MGI SNP Detail		 Chr3:115507511 S1pr1 within coordinates of
Tssr35281 1027 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246329920
MGI SNP Detail		 Chr3:115507664 S1pr1 within coordinates of
Tssr35281 874 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs216993736
MGI SNP Detail		 Chr3:115507676 S1pr1 within coordinates of
Tssr35281 862 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs229499497
MGI SNP Detail		 Chr3:115507706 S1pr1 within coordinates of
Tssr35281 832 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs242572309
MGI SNP Detail		 Chr3:115507752 S1pr1 within coordinates of
Tssr35281 786 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31725057
MGI SNP Detail		 Chr3:115507775 S1pr1 within coordinates of
Tssr35281 763 bp downstream
 SNP A/G G A A A
rs236380501
MGI SNP Detail		 Chr3:115507777 S1pr1 within coordinates of
Tssr35281 761 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs262520724
MGI SNP Detail		 Chr3:115507814 S1pr1 within coordinates of
Tssr35281 724 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30083422
MGI SNP Detail		 Chr3:115507978 S1pr1 within coordinates of
Tssr35281 560 bp downstream
 SNP A/T T T T T T T T T T T T T T A T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs30084745
MGI SNP Detail		 Chr3:115508154 S1pr1 within coordinates of
Tssr35281 384 bp downstream
 SNP A/C A A A A C A A A C A A A
rs30084747
MGI SNP Detail		 Chr3:115508185 S1pr1 within coordinates of
Tssr35281 353 bp downstream
 SNP C/T C C C C C C C C C C C C C T C
rs253615803
MGI SNP Detail		 Chr3:115508213 S1pr1 within coordinates of
Tssr35281 325 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222625714
MGI SNP Detail		 Chr3:115508215 S1pr1 within coordinates of
Tssr35281 323 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242687497
MGI SNP Detail		 Chr3:115508236 S1pr1 within coordinates of
Tssr35281 302 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249492718
MGI SNP Detail		 Chr3:115508381 Cpgi13725 within coordinates of
S1pr1 within coordinates of
Tssr35281 157 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220858397
MGI SNP Detail		 Chr3:115508548 Cpgi13725 within coordinates of
S1pr1 within coordinates of
Tssr35281 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs242880392
MGI SNP Detail		 Chr3:115508586 Cpgi13725 within coordinates of
S1pr1 within coordinates of
Tssr35281 18 bp upstream
Tssr35282 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265214827
MGI SNP Detail		 Chr3:115508616 Cpgi13725 within coordinates of
S1pr1 within coordinates of
Tssr35281 48 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223931553
MGI SNP Detail		 Chr3:115508657 Cpgi13725 within coordinates of
S1pr1 within coordinates of
Tssr35281 89 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs239678570
MGI SNP Detail		 Chr3:115508772 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 204 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs259479313
MGI SNP Detail		 Chr3:115508784 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 216 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251312551
MGI SNP Detail		 Chr3:115508786 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 218 bp upstream
 SNP A/C C A
rs30084749
MGI SNP Detail		 Chr3:115508789 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 221 bp upstream
 SNP C/G C C C C C C C C G C C C C
rs229553717
MGI SNP Detail		 Chr3:115508938 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 370 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs242632259
MGI SNP Detail		 Chr3:115509034 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 466 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C
rs30084751
MGI SNP Detail		 Chr3:115509050 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 482 bp upstream
 SNP C/T C C C C C C T C C C T C C C C
rs30084753
MGI SNP Detail		 Chr3:115509079 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 511 bp upstream
 SNP C/G G G G G G G C G G G C G G G G
rs251699109
MGI SNP Detail		 Chr3:115509116 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 548 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216364867
MGI SNP Detail		 Chr3:115509118 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 550 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs234882450
MGI SNP Detail		 Chr3:115509134 Cpgi13725 within coordinates of
Gm9889 within coordinates of
Tssr35281 566 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs264001043
MGI SNP Detail		 Chr3:115509205 Gm9889 within coordinates of
Tssr35281 637 bp upstream
 SNP C/G G C
rs248089059
MGI SNP Detail		 Chr3:115509206 Gm9889 within coordinates of
Tssr35281 638 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30078374
MGI SNP Detail		 Chr3:115509275 Gm9889 within coordinates of
Tssr35281 707 bp upstream
 SNP A/C A A C A A A C A
rs30078376
MGI SNP Detail		 Chr3:115509385 Gm9889 within coordinates of
Tssr35281 817 bp upstream
 SNP C/T C C C C C C C C C C C C C T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs260844161
MGI SNP Detail		 Chr3:115509453 Gm9889 within coordinates of
Tssr35281 885 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C C C C C C C C T C C C C
rs30078379
MGI SNP Detail		 Chr3:115509476 Gm9889 within coordinates of
Tssr35281 908 bp upstream
 SNP A/G A A A A A A A A G A A G A
rs30078381
MGI SNP Detail		 Chr3:115509510 Gm9889 within coordinates of
Tssr35281 942 bp upstream
 SNP C/T T T T T T T C T T T C T T C T
rs237881300
MGI SNP Detail		 Chr3:115509517 Gm9889 within coordinates of
Tssr35281 949 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs257671845
MGI SNP Detail		 Chr3:115509531 Gm9889 within coordinates of
Tssr35281 963 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs223903097
MGI SNP Detail		 Chr3:115509533 Gm9889 within coordinates of
Tssr35281 965 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239735003
MGI SNP Detail		 Chr3:115509563 Gm9889 within coordinates of
Tssr35281 995 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs30078383
MGI SNP Detail		 Chr3:115509595 Gm9889 within coordinates of
Rr397956 within coordinates of
Tssr35281 1027 bp upstream
 SNP G/T T T T T T G T T T T T T T T G T
rs30754885
MGI SNP Detail		 Chr3:115509761 Gm9889 within coordinates of
Rr397956 within coordinates of
Tssr35281 1193 bp upstream
 SNP C/T T T T C T T T
rs30079445
MGI SNP Detail		 Chr3:115509841 Gm9889 within coordinates of
Rr397956 within coordinates of
Tssr35281 1273 bp upstream
 SNP C/T T T T T T T C T T T C T T T T
rs264950080
MGI SNP Detail		 Chr3:115509949 Gm9889 within coordinates of
Tssr35281 1381 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs230389757
MGI SNP Detail		 Chr3:115509957 Gm9889 within coordinates of
Tssr35281 1389 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs256581343
MGI SNP Detail		 Chr3:115510128 Gm9889 within coordinates of
Tssr35281 1560 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263290822
MGI SNP Detail		 Chr3:115510140 Gm9889 within coordinates of
Tssr35281 1572 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs30079447
MGI SNP Detail		 Chr3:115510149 Gm9889 within coordinates of
Tssr35281 1581 bp upstream
 SNP C/T C C C C C C T C C C T C C T C
rs30079450
MGI SNP Detail		 Chr3:115510169 Gm9889 within coordinates of
Tssr35281 1601 bp upstream
 SNP C/T T T T T T C C C T T T T C T T C T
rs217505424
MGI SNP Detail		 Chr3:115510192 Gm9889 within coordinates of
Tssr35281 1624 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs30079452
MGI SNP Detail		 Chr3:115510202 Gm9889 within coordinates of
Tssr35281 1634 bp upstream
 SNP C/T C C C C C T C T C C C C C C C C T C C
rs30080644
MGI SNP Detail		 Chr3:115510224 Gm9889 within coordinates of
Tssr35281 1656 bp upstream
 SNP C/T C C C C T C T C C C C C C C C C C C
rs30080646
MGI SNP Detail		 Chr3:115510255 Gm9889 within coordinates of
Tssr35281 1687 bp upstream
 SNP G/T G G G G G G T G G G T G G G G
rs236138210
MGI SNP Detail		 Chr3:115510280 Gm9889 within coordinates of
Tssr35281 1712 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs262377486
MGI SNP Detail		 Chr3:115510291 Gm9889 within coordinates of
Tssr35281 1723 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220604928
MGI SNP Detail		 Chr3:115510316 Gm9889 within coordinates of
Tssr35281 1748 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
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Showing SNP(s) 1 - 73 of 73
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/10/2024
MGI 6.24 		The Jackson Laboratory