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Mouse SNP Summary
Symbol
Name
ID
Tssr35658
transcription start site region 35658
MGI:5963425

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs251214788
MGI SNP Detail
Chr3:129852737 Sec24b within coordinates of
Tssr35658 1931 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs225213893
MGI SNP Detail
Chr3:129852755 Sec24b within coordinates of
Tssr35658 1913 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs30995565
MGI SNP Detail
Chr3:129852762 Sec24b within coordinates of
Tssr35658 1906 bp downstream
SNP C/T C T C C C
rs262408655
MGI SNP Detail
Chr3:129852775 Sec24b within coordinates of
Tssr35658 1893 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs220210475
MGI SNP Detail
Chr3:129852822 Sec24b within coordinates of
Tssr35658 1846 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs237847758
MGI SNP Detail
Chr3:129852869 Sec24b within coordinates of
Tssr35658 1799 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A G A A G A A A G
rs254095442
MGI SNP Detail
Chr3:129852924 Sec24b within coordinates of
Tssr35658 1744 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs223185550
MGI SNP Detail
Chr3:129853079 Sec24b within coordinates of
Tssr35658 1589 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs30050512
MGI SNP Detail
Chr3:129853092 Sec24b within coordinates of
Tssr35658 1576 bp downstream
SNP A/T A T T A A A
rs263399517
MGI SNP Detail
Chr3:129853222 Sec24b within coordinates of
Tssr35658 1446 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230700472
MGI SNP Detail
Chr3:129853281 Sec24b within coordinates of
Tssr35658 1387 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244609146
MGI SNP Detail
Chr3:129853369 Sec24b within coordinates of
Tssr35658 1299 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs264735477
MGI SNP Detail
Chr3:129853620 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 1048 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A G A A G A A A G
rs224661096
MGI SNP Detail
Chr3:129853822 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 846 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T C T T T T T T C T T T T T T C T T T C
rs246860503
MGI SNP Detail
Chr3:129853846 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 822 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A C A A C A A A
rs234483007
MGI SNP Detail
Chr3:129853861 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 807 bp downstream
SNP C/G G C
rs226972807
MGI SNP Detail
Chr3:129853880 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 788 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs246076280
MGI SNP Detail
Chr3:129853908 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 760 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213857350
MGI SNP Detail
Chr3:129853925 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 743 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G A G G A G G G G
rs238090181
MGI SNP Detail
Chr3:129853974 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 694 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs257798468
MGI SNP Detail
Chr3:129854029 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 639 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212061952
MGI SNP Detail
Chr3:129854042 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 626 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230458760
MGI SNP Detail
Chr3:129854080 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 588 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
rs254153198
MGI SNP Detail
Chr3:129854104 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 564 bp downstream
SNP C/T T T T T T T T T T T T C T T C T T C T T T T T T C T T T T C T T T
rs580415661
MGI SNP Detail
Chr3:129854173 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 495 bp downstream
SNP C/T T T T T T T T T T T T T T T C T T C T T T T T T T C T T T T T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583560318
MGI SNP Detail
Chr3:129854207 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 461 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs223295392
MGI SNP Detail
Chr3:129854249 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 419 bp downstream
SNP A/T T A T A A A T T A A A T T A T T T T T T T T T T T T T A T T T T T T T T T T T A T A
rs240278032
MGI SNP Detail
Chr3:129854456 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 212 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs263192165
MGI SNP Detail
Chr3:129854539 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 129 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G A G G G G G G A G G G G A G G G G G G
rs222266716
MGI SNP Detail
Chr3:129854568 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 100 bp downstream
SNP A/G A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs262312150
MGI SNP Detail
Chr3:129854653 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 15 bp downstream
SNP G/T T G
rs261708253
MGI SNP Detail
Chr3:129854689 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 10 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C G C C C C C C C C C C G C C C C C C C
rs224733507
MGI SNP Detail
Chr3:129854793 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 114 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C C A C C C C C C C C C C A A C C C C C C
rs241106804
MGI SNP Detail
Chr3:129854838 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 159 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T C C T T T T T T
rs260123810
MGI SNP Detail
Chr3:129854895 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 216 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C T T C C T C C C
rs227034968
MGI SNP Detail
Chr3:129854902 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 223 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C T T C C C C C C
rs253318765
MGI SNP Detail
Chr3:129854934 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 255 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs214303152
MGI SNP Detail
Chr3:129854987 Cpgi13821 within coordinates of
Sec24b within coordinates of
Tssr35658 308 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G G G A A G G A G G G A
rs230923875
MGI SNP Detail
Chr3:129855102 Sec24b within coordinates of
Tssr35658 423 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T C T T T T T T T
rs256283492
MGI SNP Detail
Chr3:129855148 Sec24b within coordinates of
Tssr35658 469 bp upstream
Tssr35659 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A G G A A G A A A G
rs212009295
MGI SNP Detail
Chr3:129855161 Sec24b within coordinates of
Tssr35658 482 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230557896
MGI SNP Detail
Chr3:129855278 Tssr35658 599 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs247907906
MGI SNP Detail
Chr3:129855301 Tssr35658 622 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T C T T T T T T T
rs217293715
MGI SNP Detail
Chr3:129855570 Tssr35658 891 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G A G G G G G G G A
rs233674297
MGI SNP Detail
Chr3:129855758 Tssr35658 1079 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C T T C C T C C C T
rs259153718
MGI SNP Detail
Chr3:129855763 Tssr35658 1084 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G G G T T G G T G G G
rs221709649
MGI SNP Detail
Chr3:129855793 Tssr35658 1114 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C T C C C T C C C C C C
rs236638603
MGI SNP Detail
Chr3:129855795 Tssr35658 1116 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G A G G G G G G
rs260609044
MGI SNP Detail
Chr3:129855846 Tssr35658 1167 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G A G G G G G G G
rs219027843
MGI SNP Detail
Chr3:129855950 Tssr35658 1271 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G A G G G G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241162483
MGI SNP Detail
Chr3:129856064 Tssr35658 1385 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260187642
MGI SNP Detail
Chr3:129856094 Tssr35658 1415 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T C C T T C T T T C
rs220967643
MGI SNP Detail
Chr3:129856105 Tssr35658 1426 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249334563
MGI SNP Detail
Chr3:129856125 Tssr35658 1446 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs262446039
MGI SNP Detail
Chr3:129856153 Tssr35658 1474 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C C C A A C C C C C C A
rs231282270
MGI SNP Detail
Chr3:129856156 Tssr35658 1477 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A G A A A A A A A
rs249200334
MGI SNP Detail
Chr3:129856184 Tssr35658 1505 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs256831194
MGI SNP Detail
Chr3:129856208 Tssr35658 1529 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T C C T T C T T T C
rs224996421
MGI SNP Detail
Chr3:129856234 Tssr35658 1555 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T T T T T T A T T T A A T T T T T T A
rs247971742
MGI SNP Detail
Chr3:129856236 Tssr35658 1557 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G T T G G G G G G T
rs217305946
MGI SNP Detail
Chr3:129856265 Tssr35658 1586 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs237706676
MGI SNP Detail
Chr3:129856303 Tssr35658 1624 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G A A G G G G G G A
rs257992422
MGI SNP Detail
Chr3:129856310 Tssr35658 1631 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs213444756
MGI SNP Detail
Chr3:129856315 Tssr35658 1636 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs238791848
MGI SNP Detail
Chr3:129856317 Tssr35658 1638 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs255222059
MGI SNP Detail
Chr3:129856324 Tssr35658 1645 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T T T A A T T A T T T A
rs218369563
MGI SNP Detail
Chr3:129856374 Tssr35658 1695 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C
rs234757379
MGI SNP Detail
Chr3:129856414 Tssr35658 1735 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253478033
MGI SNP Detail
Chr3:129856457 Tssr35658 1778 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T C C T T C T T T C
rs30306166
MGI SNP Detail
Chr3:129856473 Tssr35658 1794 bp upstream
SNP C/T C T T C C
rs31337266
MGI SNP Detail
Chr3:129856522 Tssr35658 1843 bp upstream
SNP C/T C T T C C
rs265140463
MGI SNP Detail
Chr3:129856583 Tssr35658 1904 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs223684113
MGI SNP Detail
Chr3:129856675 Tssr35658 1996 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C A C C C C C C C C C C C C C C C C C C C C C A C C C C
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Showing SNP(s) 1 - 73 of 73

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory