About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr36574
transcription start site region 36574
MGI:5964341

<< first < prev1 next > last >>
Showing SNP(s) 1 - 77 of 77

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27680691
MGI SNP Detail
Chr4:19278978 Tssr36574 1942 bp upstream
SNP A/C C C C C C C C C C C C C A C
rs256267500
MGI SNP Detail
Chr4:19278986 Tssr36574 1934 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T A T T T T A T A T T T T T T T T T T A T T T T T T T A T T T T
rs27680690
MGI SNP Detail
Chr4:19279012 Tssr36574 1908 bp upstream
SNP C/T C C C C C T
rs244008009
MGI SNP Detail
Chr4:19279074 Tssr36574 1846 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265549613
MGI SNP Detail
Chr4:19279120 Tssr36574 1800 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G T G G G G T G T G G G G G G G G G G T G G G G G G G T G G G G
rs221584026
MGI SNP Detail
Chr4:19279121 Tssr36574 1799 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T G T T T T G T G T T T T T T T T T T G T T T T T T T G T T T T
rs584043324
MGI SNP Detail
Chr4:19279274 Tssr36574 1646 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T G T T T T T T T G T T T T
rs108454194
MGI SNP Detail
Chr4:19279402 Tssr36574 1518 bp upstream
SNP T T
rs108280525
MGI SNP Detail
Chr4:19279426 Tssr36574 1494 bp upstream
SNP G G G
rs587455609
MGI SNP Detail
Chr4:19279468 Tssr36574 1452 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G A G G G G G G G G G G G G G A G G G G A G G G A
rs241009075
MGI SNP Detail
Chr4:19279512 Tssr36574 1408 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs259898936
MGI SNP Detail
Chr4:19279523 Tssr36574 1397 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G A G G G G G G G G G G A G G G G G G G A G G G G
rs580206983
MGI SNP Detail
Chr4:19279526 Tssr36574 1394 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs583643479
MGI SNP Detail
Chr4:19279527 Tssr36574 1393 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs223586604
MGI SNP Detail
Chr4:19279575 Tssr36574 1345 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A T A A A A A A A A A A T A A A A A A A A A A A A
rs254630037
MGI SNP Detail
Chr4:19279577 Tssr36574 1343 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A G A A A A A A A A A A G A A A A A A A G A A A A
rs262576960
MGI SNP Detail
Chr4:19279594 Tssr36574 1326 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231491930
MGI SNP Detail
Chr4:19279615 Tssr36574 1305 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs252625094
MGI SNP Detail
Chr4:19279630 Tssr36574 1290 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T C T T T T
rs216193926
MGI SNP Detail
Chr4:19279631 Tssr36574 1289 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs234504176
MGI SNP Detail
Chr4:19279648 Tssr36574 1272 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs587120113
MGI SNP Detail
Chr4:19279695 Tssr36574 1225 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs247808399
MGI SNP Detail
Chr4:19279743 Tssr36574 1177 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs217066983
MGI SNP Detail
Chr4:19279769 Tssr36574 1151 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A C A A A A
rs234355554
MGI SNP Detail
Chr4:19279797 Tssr36574 1123 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261510380
MGI SNP Detail
Chr4:19279802 Tssr36574 1118 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs222594890
MGI SNP Detail
Chr4:19279853 Tssr36574 1067 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs238911903
MGI SNP Detail
Chr4:19279855 Tssr36574 1065 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs258487037
MGI SNP Detail
Chr4:19279857 Tssr36574 1063 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs221358100
MGI SNP Detail
Chr4:19279865 Tssr36574 1055 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs240976854
MGI SNP Detail
Chr4:19279901 Tssr36574 1019 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A A A A A T A A A A A A A A A A A A
rs260067841
MGI SNP Detail
Chr4:19279914 Tssr36574 1006 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218008360
MGI SNP Detail
Chr4:19279931 Tssr36574 989 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G A G G G G
rs242324087
MGI SNP Detail
Chr4:19279937 Tssr36574 983 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G A G G G G
rs580941553
MGI SNP Detail
Chr4:19280137 Tssr36574 783 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs231223022
MGI SNP Detail
Chr4:19280234 Tssr36574 686 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257733918
MGI SNP Detail
Chr4:19280281 Tssr36574 639 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs27680689
MGI SNP Detail
Chr4:19280283 Tssr36574 637 bp upstream
SNP C/T C C C C C C C C C C C C C T C
rs228777642
MGI SNP Detail
Chr4:19280364 Tssr36574 556 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T C T T T T
rs27680688
MGI SNP Detail
Chr4:19280381 Tssr36574 539 bp upstream
SNP C/T C C C C C C C C C C C C C T C
rs217231326
MGI SNP Detail
Chr4:19280521 Tssr36574 399 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs227729824
MGI SNP Detail
Chr4:19280559 Tssr36574 361 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs249609699
MGI SNP Detail
Chr4:19280564 Tssr36574 356 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs586195965
MGI SNP Detail
Chr4:19280594 Tssr36574 326 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs213830529
MGI SNP Detail
Chr4:19280609 Tssr36574 311 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T
rs236927453
MGI SNP Detail
Chr4:19280620 Tssr36574 300 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T C T T T T T T T T T T C T T T T T T T C T T T T
rs251226318
MGI SNP Detail
Chr4:19280925 Cngb3 within coordinates of
Tssr36574 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C G C C C C C C C C C C G C C C C C C C C C C C C
rs215775317
MGI SNP Detail
Chr4:19280926 Cngb3 within coordinates of
Tssr36574 within coordinates of
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A G A A A A A A A A A A G A A A A A A A G A A A A
rs234217519
MGI SNP Detail
Chr4:19280986 Cngb3 within coordinates of
Tssr36574 55 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs253341511
MGI SNP Detail
Chr4:19280988 Cngb3 within coordinates of
Tssr36574 57 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T C T T T T T T T T T T C T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220705966
MGI SNP Detail
Chr4:19281056 Cngb3 within coordinates of
Tssr36574 125 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245239595
MGI SNP Detail
Chr4:19281123 Cngb3 within coordinates of
Tssr36574 192 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs257106694
MGI SNP Detail
Chr4:19281161 Cngb3 within coordinates of
Tssr36574 230 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T G T T T T
rs223246475
MGI SNP Detail
Chr4:19281305 Cngb3 within coordinates of
Tssr36574 374 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T A T T T T T T T T T T T T T T T T T T A T T T T
rs27680687
MGI SNP Detail
Chr4:19281324 Cngb3 within coordinates of
Tssr36574 393 bp downstream
SNP A/G A A A A G A A A A A A A
rs27680686
MGI SNP Detail
Chr4:19281364 Cngb3 within coordinates of
Rr106676 within coordinates of
Tssr36574 433 bp downstream
SNP C/G G G G G G G G G G G G G C G
rs27680685
MGI SNP Detail
Chr4:19281446 Cngb3 within coordinates of
Rr106676 within coordinates of
Tssr36574 515 bp downstream
SNP G/T T T T T T T G T T T T T T G T
rs27680684
MGI SNP Detail
Chr4:19281525 Cngb3 within coordinates of
Rr106676 within coordinates of
Tssr36574 594 bp downstream
SNP A/G A A A A A A A A A A A A A G A
rs261086919
MGI SNP Detail
Chr4:19281526 Cngb3 within coordinates of
Rr106676 within coordinates of
Tssr36574 595 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs586637204
MGI SNP Detail
Chr4:19281617 Cngb3 within coordinates of
Rr106676 within coordinates of
Tssr36574 686 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs227365797
MGI SNP Detail
Chr4:19281677 Cngb3 within coordinates of
Rr106676 within coordinates of
Tssr36574 746 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27680683
MGI SNP Detail
Chr4:19281678 Cngb3 within coordinates of
Rr106676 within coordinates of
Tssr36574 747 bp downstream
SNP G/T T T T T T T G T T T T T T G T
rs213311357
MGI SNP Detail
Chr4:19281691 Cngb3 within coordinates of
Rr106676 within coordinates of
Tssr36574 760 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230798955
MGI SNP Detail
Chr4:19281720 Cngb3 within coordinates of
Rr106676 within coordinates of
Tssr36574 789 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs245230175
MGI SNP Detail
Chr4:19281817 Cngb3 within coordinates of
Tssr36574 886 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs215944264
MGI SNP Detail
Chr4:19281948 Cngb3 within coordinates of
Tssr36574 1017 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234162540
MGI SNP Detail
Chr4:19281949 Cngb3 within coordinates of
Tssr36574 1018 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs253050540
MGI SNP Detail
Chr4:19282140 Cngb3 within coordinates of
Tssr36574 1209 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212060057
MGI SNP Detail
Chr4:19282292 Cngb3 within coordinates of
Tssr36574 1361 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs27680682
MGI SNP Detail
Chr4:19282563 Cngb3 within coordinates of
Tssr36574 1632 bp downstream
SNP C/T C C C C C C C C C C C C C T C
rs262115956
MGI SNP Detail
Chr4:19282655 Cngb3 within coordinates of
Tssr36574 1724 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G A G G G G
rs223485807
MGI SNP Detail
Chr4:19282698 Cngb3 within coordinates of
Tssr36574 1767 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T C T T T T T T T T T T T T T T T T T T C T T T T
rs240621809
MGI SNP Detail
Chr4:19282765 Cngb3 within coordinates of
Tssr36574 1834 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A G A A A A
rs27680681
MGI SNP Detail
Chr4:19282791 Cngb3 within coordinates of
Tssr36574 1860 bp downstream
SNP A/G G G G G G G A G G G G G G G G
rs27680680
MGI SNP Detail
Chr4:19282839 Cngb3 within coordinates of
Tssr36574 1908 bp downstream
SNP C/T C C C C C C T C C C C C C T C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27680679
MGI SNP Detail
Chr4:19282855 Cngb3 within coordinates of
Tssr36574 1924 bp downstream
SNP C/T C C C C C C T C C C C C C C C
rs27680678
MGI SNP Detail
Chr4:19282888 Cngb3 within coordinates of
Tssr36574 1957 bp downstream
SNP G/T T T T T T T T T T T T T T G T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 77 of 77

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

Building initial tooltip...