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Mouse SNP Summary
Symbol
Name
ID 		Tssr39294
transcription start site region 39294
MGI:5967061

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Showing SNP(s) 1 - 62 of 62

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213364363
MGI SNP Detail		 Chr4:130551697 Sdc3 within coordinates of
Tssr39294 1635 bp upstream
 SNP C/T C T
rs27590006
MGI SNP Detail		 Chr4:130551740 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 1592 bp upstream
 SNP C/T C C C C C C C C C T T C C T C
rs27590005
MGI SNP Detail		 Chr4:130551742 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 1590 bp upstream
 SNP A/G G G G G G G G G G G G G G G A
rs236836090
MGI SNP Detail		 Chr4:130552008 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 1324 bp upstream
 SNP A/G G A
rs49059560
MGI SNP Detail		 Chr4:130552044 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 1288 bp upstream
 SNP C/T C C T T
rs27590004
MGI SNP Detail		 Chr4:130552249 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 1083 bp upstream
 SNP A/G A A A A A A A A A A G A A A A
rs217190276
MGI SNP Detail		 Chr4:130552250 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 1082 bp upstream
 SNP C/G C G
rs27590003
MGI SNP Detail		 Chr4:130552381 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 951 bp upstream
 SNP A/G G G G G G G G G G A A A G G A G
rs27590002
MGI SNP Detail		 Chr4:130552450 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 882 bp upstream
 SNP A/G G G G G G G G G G G A G G G G
rs46060128
MGI SNP Detail		 Chr4:130552482 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 850 bp upstream
 SNP C/T C C T
rs27590001
MGI SNP Detail		 Chr4:130552672 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 660 bp upstream
 SNP A/G A A A A A A G A A G A G A A G G A
rs254732887
MGI SNP Detail		 Chr4:130552693 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 639 bp upstream
 SNP A/G A G
rs27590000
MGI SNP Detail		 Chr4:130552704 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 628 bp upstream
 SNP A/G A A A A A A G A A A A A A A G A
rs13472621
MGI SNP Detail		 Chr4:130552845 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 487 bp upstream
 SNP C/T C T T T C T T T C C C C T T C C C
rs48619362
MGI SNP Detail		 Chr4:130552960 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 372 bp upstream
 SNP C/T T C C
rs262632943
MGI SNP Detail		 Chr4:130552980 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 352 bp upstream
 SNP C/T T C
rs27589999
MGI SNP Detail		 Chr4:130553056 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 276 bp upstream
 SNP C/T C C C C C C T C C C C C C C C
rs222689746
MGI SNP Detail		 Chr4:130553358 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 9 bp downstream
 SNP A/G A G
rs27589998
MGI SNP Detail		 Chr4:130553434 Gm26716 within coordinates of
Sdc3 within coordinates of
Tssr39294 85 bp downstream
 SNP A/G A A A A A A A A A G G A A G A
rs27589997
MGI SNP Detail		 Chr4:130553630 Tssr39294 281 bp downstream
 SNP C/T T T T T T T T T C T C T T C C T
rs27589996
MGI SNP Detail		 Chr4:130553697 Tssr39294 348 bp downstream
 SNP G/T G G G G G G G G G T G G G T
rs27589995
MGI SNP Detail		 Chr4:130553698 Tssr39294 349 bp downstream
 SNP A/C C C C C C C C C C C C C C A
rs261642351
MGI SNP Detail		 Chr4:130553746 Tssr39294 397 bp downstream
 SNP C/T T C
rs222900250
MGI SNP Detail		 Chr4:130553870 Tssr39294 521 bp downstream
 SNP C/T C T
rs240971743
MGI SNP Detail		 Chr4:130553875 Tssr39294 526 bp downstream
 SNP A/G A G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257976074
MGI SNP Detail		 Chr4:130554235 Tssr39294 886 bp downstream
 SNP A/G G A
rs27589994
MGI SNP Detail		 Chr4:130554322 Tssr39294 973 bp downstream
 SNP C/T C C C C C C C C C T C C C C C
rs27589993
MGI SNP Detail		 Chr4:130554328 Tssr39294 979 bp downstream
 SNP C/T C C C C C C T C C T T C C T C
rs226681286
MGI SNP Detail		 Chr4:130554360 Tssr39294 1011 bp downstream
 SNP A/G G A
rs27589992
MGI SNP Detail		 Chr4:130554557 Tssr39294 1208 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs258433821
MGI SNP Detail		 Chr4:130554589 Tssr39294 1240 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231137275
MGI SNP Detail		 Chr4:130554605 Tssr39294 1256 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250724196
MGI SNP Detail		 Chr4:130554620 Tssr39294 1271 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs264818606
MGI SNP Detail		 Chr4:130554631 Tssr39294 1282 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227514066
MGI SNP Detail		 Chr4:130554693 Tssr39294 1344 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs251536861
MGI SNP Detail		 Chr4:130554695 Tssr39294 1346 bp downstream
 SNP A/G A G
rs216480221
MGI SNP Detail		 Chr4:130554715 Tssr39294 1366 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs233409530
MGI SNP Detail		 Chr4:130554727 Tssr39294 1378 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244973326
MGI SNP Detail		 Chr4:130554753 Tssr39294 1404 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs265063187
MGI SNP Detail		 Chr4:130554769 Tssr39294 1420 bp downstream
 SNP C/T C T
rs214123663
MGI SNP Detail		 Chr4:130554821 Tssr39294 1472 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27589991
MGI SNP Detail		 Chr4:130554830 Tssr39294 1481 bp downstream
 SNP C/T C C C C C C C C T T C C T C
rs228353674
MGI SNP Detail		 Chr4:130554835 Tssr39294 1486 bp downstream
 SNP C/T C T
rs220392615
MGI SNP Detail		 Chr4:130554836 Tssr39294 1487 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240616218
MGI SNP Detail		 Chr4:130554881 Tssr39294 1532 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27589990
MGI SNP Detail		 Chr4:130554883 Tssr39294 1534 bp downstream
 SNP A/G G G G G G G A G G G G G G G G
rs222026706
MGI SNP Detail		 Chr4:130554904 Tssr39294 1555 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs240738361
MGI SNP Detail		 Chr4:130554983 Tssr39294 1634 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252111921
MGI SNP Detail		 Chr4:130555016 Tssr39294 1667 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs222655253
MGI SNP Detail		 Chr4:130555036 Tssr39294 1687 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245879138
MGI SNP Detail		 Chr4:130555038 Tssr39294 1689 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs251986874
MGI SNP Detail		 Chr4:130555040 Tssr39294 1691 bp downstream
 SNP C/T C T
rs261943481
MGI SNP Detail		 Chr4:130555087 Tssr39294 1738 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227952893
MGI SNP Detail		 Chr4:130555106 Tssr39294 1757 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs241425801
MGI SNP Detail		 Chr4:130555111 Tssr39294 1762 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs258885606
MGI SNP Detail		 Chr4:130555124 Tssr39294 1775 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs217071292
MGI SNP Detail		 Chr4:130555180 Tssr39294 1831 bp downstream
 SNP C/G G C
rs245070737
MGI SNP Detail		 Chr4:130555183 Tssr39294 1834 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs214701290
MGI SNP Detail		 Chr4:130555185 Tssr39294 1836 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235358934
MGI SNP Detail		 Chr4:130555193 Tssr39294 1844 bp downstream
 SNP A/G G A
rs254624958
MGI SNP Detail		 Chr4:130555199 Tssr39294 1850 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247021406
MGI SNP Detail		 Chr4:130555220 Tssr39294 1871 bp downstream
 SNP G/T G T
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Showing SNP(s) 1 - 62 of 62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory