About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr39857
transcription start site region 39857
MGI:5967624

<< first < prev1 next > last >>
Showing SNP(s) 1 - 51 of 51

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32027294
MGI SNP Detail
Chr4:138179748 Tssr39857 1918 bp upstream
SNP C/T C T C T T T
rs32717296
MGI SNP Detail
Chr4:138179822 Tssr39857 1844 bp upstream
SNP G/T T T T G G G
rs233055161
MGI SNP Detail
Chr4:138179839 Tssr39857 1827 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs250730471
MGI SNP Detail
Chr4:138179878 Tssr39857 1788 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214968414
MGI SNP Detail
Chr4:138179888 Tssr39857 1778 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs223424182
MGI SNP Detail
Chr4:138179970 Tssr39857 1696 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs242825052
MGI SNP Detail
Chr4:138180035 Tssr39857 1631 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216483631
MGI SNP Detail
Chr4:138180071 Tssr39857 1595 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs234803594
MGI SNP Detail
Chr4:138180102 Tssr39857 1564 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31761974
MGI SNP Detail
Chr4:138180189 Tssr39857 1477 bp upstream
SNP C/G C C C G G G
rs216339113
MGI SNP Detail
Chr4:138180239 Tssr39857 1427 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs238564196
MGI SNP Detail
Chr4:138180296 Tssr39857 1370 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258250279
MGI SNP Detail
Chr4:138180315 Tssr39857 1351 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218369792
MGI SNP Detail
Chr4:138180320 Tssr39857 1346 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219160957
MGI SNP Detail
Chr4:138180420 Tssr39857 1246 bp upstream
SNP G G G
rs254556472
MGI SNP Detail
Chr4:138180439 Tssr39857 1227 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223634815
MGI SNP Detail
Chr4:138180449 Tssr39857 1217 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242351079
MGI SNP Detail
Chr4:138180607 Rr100366 within coordinates of
Tssr39857 1059 bp upstream
SNP A A A
rs46092785
MGI SNP Detail
Chr4:138180689 Rr100366 within coordinates of
Tssr39857 977 bp upstream
SNP A A A
rs230093721
MGI SNP Detail
Chr4:138180879 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 787 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224510779
MGI SNP Detail
Chr4:138180894 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 772 bp upstream
SNP C C C
rs246775512
MGI SNP Detail
Chr4:138180896 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 770 bp upstream
SNP T T T
rs223358171
MGI SNP Detail
Chr4:138181001 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 665 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs47611314
MGI SNP Detail
Chr4:138181034 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 632 bp upstream
SNP A A A
rs216425023
MGI SNP Detail
Chr4:138181381 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 285 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs50433927
MGI SNP Detail
Chr4:138181673 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 within coordinates of
SNP A A A
rs252095613
MGI SNP Detail
Chr4:138181730 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 42 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238014966
MGI SNP Detail
Chr4:138181733 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 45 bp downstream
SNP G G G
rs235887108
MGI SNP Detail
Chr4:138181775 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 87 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs253625810
MGI SNP Detail
Chr4:138181778 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 90 bp downstream
SNP T T T
rs212450350
MGI SNP Detail
Chr4:138181828 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 140 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs224024577
MGI SNP Detail
Chr4:138181862 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 174 bp downstream
SNP C C C
rs230946164
MGI SNP Detail
Chr4:138181867 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 179 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs586507915
MGI SNP Detail
Chr4:138181888 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 200 bp downstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs254699931
MGI SNP Detail
Chr4:138181891 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 203 bp downstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs223747687
MGI SNP Detail
Chr4:138182048 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 360 bp downstream
Tssr39859 within coordinates of
SNP C/G C C C C G C G C C C C G G C G G G C G C G C C C C C G G C C G C G G C G G G
rs247978666
MGI SNP Detail
Chr4:138182144 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 456 bp downstream
SNP A/C C C C C C A C C C C C C C C C A C C C C C C C C C C C C A C A A C C A A
rs259669165
MGI SNP Detail
Chr4:138182204 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 516 bp downstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs222164124
MGI SNP Detail
Chr4:138182411 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 723 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246678253
MGI SNP Detail
Chr4:138182550 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 862 bp downstream
SNP A/C C A
rs32660131
MGI SNP Detail
Chr4:138182712 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1024 bp downstream
SNP A/T T T A T A
rs48853612
MGI SNP Detail
Chr4:138182738 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1050 bp downstream
SNP A/G A G
rs32604345
MGI SNP Detail
Chr4:138182741 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1053 bp downstream
SNP A/G A A G A G
rs32458331
MGI SNP Detail
Chr4:138182864 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1176 bp downstream
SNP A/T T T A A A
rs229145638
MGI SNP Detail
Chr4:138182920 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1232 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256950796
MGI SNP Detail
Chr4:138183082 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1394 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263466468
MGI SNP Detail
Chr4:138183159 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1471 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33863310
MGI SNP Detail
Chr4:138183172 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1484 bp downstream
SNP G/T T T G G G
rs251200204
MGI SNP Detail
Chr4:138183233 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1545 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237183762
MGI SNP Detail
Chr4:138183424 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1736 bp downstream
SNP A A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243730280
MGI SNP Detail
Chr4:138183564 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1876 bp downstream
SNP T T T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 51 of 51

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory