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Mouse SNP Summary
Symbol
Name
ID 		Tssr39857
transcription start site region 39857
MGI:5967624

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Showing SNP(s) 1 - 51 of 51

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32027294
MGI SNP Detail		 Chr4:138179748 Tssr39857 1918 bp upstream
 SNP C/T C T C T T T
rs32717296
MGI SNP Detail		 Chr4:138179822 Tssr39857 1844 bp upstream
 SNP G/T T T T G G G
rs233055161
MGI SNP Detail		 Chr4:138179839 Tssr39857 1827 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs250730471
MGI SNP Detail		 Chr4:138179878 Tssr39857 1788 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214968414
MGI SNP Detail		 Chr4:138179888 Tssr39857 1778 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs223424182
MGI SNP Detail		 Chr4:138179970 Tssr39857 1696 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs242825052
MGI SNP Detail		 Chr4:138180035 Tssr39857 1631 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216483631
MGI SNP Detail		 Chr4:138180071 Tssr39857 1595 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs234803594
MGI SNP Detail		 Chr4:138180102 Tssr39857 1564 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31761974
MGI SNP Detail		 Chr4:138180189 Tssr39857 1477 bp upstream
 SNP C/G C C C G G G
rs216339113
MGI SNP Detail		 Chr4:138180239 Tssr39857 1427 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs238564196
MGI SNP Detail		 Chr4:138180296 Tssr39857 1370 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258250279
MGI SNP Detail		 Chr4:138180315 Tssr39857 1351 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs218369792
MGI SNP Detail		 Chr4:138180320 Tssr39857 1346 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219160957
MGI SNP Detail		 Chr4:138180420 Tssr39857 1246 bp upstream
 SNP G G G
rs254556472
MGI SNP Detail		 Chr4:138180439 Tssr39857 1227 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223634815
MGI SNP Detail		 Chr4:138180449 Tssr39857 1217 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242351079
MGI SNP Detail		 Chr4:138180607 Rr100366 within coordinates of
Tssr39857 1059 bp upstream
 SNP A A A
rs46092785
MGI SNP Detail		 Chr4:138180689 Rr100366 within coordinates of
Tssr39857 977 bp upstream
 SNP A A A
rs230093721
MGI SNP Detail		 Chr4:138180879 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 787 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224510779
MGI SNP Detail		 Chr4:138180894 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 772 bp upstream
 SNP C C C
rs246775512
MGI SNP Detail		 Chr4:138180896 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 770 bp upstream
 SNP T T T
rs223358171
MGI SNP Detail		 Chr4:138181001 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 665 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs47611314
MGI SNP Detail		 Chr4:138181034 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 632 bp upstream
 SNP A A A
rs216425023
MGI SNP Detail		 Chr4:138181381 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 285 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs50433927
MGI SNP Detail		 Chr4:138181673 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 within coordinates of
 SNP A A A
rs252095613
MGI SNP Detail		 Chr4:138181730 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 42 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238014966
MGI SNP Detail		 Chr4:138181733 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 45 bp downstream
 SNP G G G
rs235887108
MGI SNP Detail		 Chr4:138181775 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 87 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs253625810
MGI SNP Detail		 Chr4:138181778 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 90 bp downstream
 SNP T T T
rs212450350
MGI SNP Detail		 Chr4:138181828 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 140 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs224024577
MGI SNP Detail		 Chr4:138181862 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 174 bp downstream
 SNP C C C
rs230946164
MGI SNP Detail		 Chr4:138181867 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 179 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs586507915
MGI SNP Detail		 Chr4:138181888 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 200 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs254699931
MGI SNP Detail		 Chr4:138181891 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 203 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs223747687
MGI SNP Detail		 Chr4:138182048 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 360 bp downstream
Tssr39859 within coordinates of
 SNP C/G C C C C G C G C C C C G G C G G G C G C G C C C C C G G C C G C G G C G G G
rs247978666
MGI SNP Detail		 Chr4:138182144 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 456 bp downstream
 SNP A/C C C C C C A C C C C C C C C C A C C C C C C C C C C C C A C A A C C A A
rs259669165
MGI SNP Detail		 Chr4:138182204 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 516 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C
rs222164124
MGI SNP Detail		 Chr4:138182411 Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 723 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246678253
MGI SNP Detail		 Chr4:138182550 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 862 bp downstream
 SNP A/C C A
rs32660131
MGI SNP Detail		 Chr4:138182712 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1024 bp downstream
 SNP A/T T T A T A
rs48853612
MGI SNP Detail		 Chr4:138182738 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1050 bp downstream
 SNP A/G A G
rs32604345
MGI SNP Detail		 Chr4:138182741 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1053 bp downstream
 SNP A/G A A G A G
rs32458331
MGI SNP Detail		 Chr4:138182864 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1176 bp downstream
 SNP A/T T T A A A
rs229145638
MGI SNP Detail		 Chr4:138182920 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1232 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs256950796
MGI SNP Detail		 Chr4:138183082 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1394 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263466468
MGI SNP Detail		 Chr4:138183159 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1471 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33863310
MGI SNP Detail		 Chr4:138183172 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1484 bp downstream
 SNP G/T T T G G G
rs251200204
MGI SNP Detail		 Chr4:138183233 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1545 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237183762
MGI SNP Detail		 Chr4:138183424 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1736 bp downstream
 SNP A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243730280
MGI SNP Detail		 Chr4:138183564 Camk2n1 within coordinates of
Cpgi15153 within coordinates of
Rr100366 within coordinates of
Tssr39857 1876 bp downstream
 SNP T T T
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Showing SNP(s) 1 - 51 of 51
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory