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Mouse SNP Summary
Symbol
Name
ID 		Tssr39977
transcription start site region 39977
MGI:5967744

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs584016338
MGI SNP Detail		 Chr4:140425929 Tssr39977 1984 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G A A G A G G G G A G G G G G G G G G G
rs45980644
MGI SNP Detail		 Chr4:140425969 Tssr39977 1944 bp upstream
 SNP C/G C G C
rs235869821
MGI SNP Detail		 Chr4:140425974 Tssr39977 1939 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs262452795
MGI SNP Detail		 Chr4:140425995 Tssr39977 1918 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G A G G G G G G G G G G G A A A G A G G G G A G G G G G A G G G G
rs220373045
MGI SNP Detail		 Chr4:140426001 Tssr39977 1912 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs49300813
MGI SNP Detail		 Chr4:140426038 Tssr39977 1875 bp upstream
 SNP G G G
rs50461814
MGI SNP Detail		 Chr4:140426048 Tssr39977 1865 bp upstream
 SNP T T T
rs222097279
MGI SNP Detail		 Chr4:140426079 Tssr39977 1834 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G A A G A G G G G A G G G G G G G G G
rs49770559
MGI SNP Detail		 Chr4:140426101 Tssr39977 1812 bp upstream
 SNP A A A
rs52428563
MGI SNP Detail		 Chr4:140426114 Tssr39977 1799 bp upstream
 SNP A/G G A
rs47412035
MGI SNP Detail		 Chr4:140426117 Tssr39977 1796 bp upstream
 SNP A A A
rs243210782
MGI SNP Detail		 Chr4:140426125 Tssr39977 1788 bp upstream
 SNP A/C A A A C A C A A A C C C C C C C C C A C A C A A A A C A A C A C A A A A A C A A C A A A C A C A A A A A
rs265401694
MGI SNP Detail		 Chr4:140426128 Tssr39977 1785 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C A C C C C C C C C C C C A A A C A C C C C A C C C C C A C C C C
rs32093671
MGI SNP Detail		 Chr4:140426150 Tssr39977 1763 bp upstream
 SNP A/C A A C A
rs244543438
MGI SNP Detail		 Chr4:140426153 Tssr39977 1760 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216902575
MGI SNP Detail		 Chr4:140426167 Tssr39977 1746 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586809087
MGI SNP Detail		 Chr4:140426245 Tssr39977 1668 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs31915899
MGI SNP Detail		 Chr4:140426334 Rr377298 within coordinates of
Tssr39977 1579 bp upstream
 SNP A/G A G G
rs246285597
MGI SNP Detail		 Chr4:140426429 Rr377298 within coordinates of
Tssr39977 1484 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs216389851
MGI SNP Detail		 Chr4:140426520 Gm69527 within coordinates of
Rr377298 within coordinates of
Tssr39977 1393 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G A A G A G G G G A G G G G G G G G G G
rs237712940
MGI SNP Detail		 Chr4:140426551 Gm69527 within coordinates of
Rr377298 within coordinates of
Tssr39977 1362 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C T C C C C C C C C C C C T T T C T C C C C T C C C C C C C C C C
rs257532212
MGI SNP Detail		 Chr4:140426584 Gm69527 within coordinates of
Rr377298 within coordinates of
Tssr39977 1329 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32466867
MGI SNP Detail		 Chr4:140426717 Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603517 within coordinates of
Tssr39977 1196 bp upstream
 SNP G/T T G T
rs230641463
MGI SNP Detail		 Chr4:140426795 Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603517 within coordinates of
Tssr39977 1118 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A
rs32055604
MGI SNP Detail		 Chr4:140426819 Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603517 within coordinates of
Tssr39977 1094 bp upstream
 SNP C/T C C T T C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222520618
MGI SNP Detail		 Chr4:140426828 Cpgi15194 within coordinates of
Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603517 within coordinates of
Tssr39977 1085 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T G T T T T T T T T T T T T T T G T T T T
rs239087241
MGI SNP Detail		 Chr4:140426863 Cpgi15194 within coordinates of
Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603517 within coordinates of
Tssr39977 1050 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs263013289
MGI SNP Detail		 Chr4:140426883 Cpgi15194 within coordinates of
Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603517 within coordinates of
Tssr39977 1030 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225141985
MGI SNP Detail		 Chr4:140427054 Cpgi15194 within coordinates of
Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603517 within coordinates of
Tssr39977 859 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G A G G G A G G G A G A G G G G A G
rs32973665
MGI SNP Detail		 Chr4:140427152 Cpgi15194 within coordinates of
Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603517 within coordinates of
Tssr39977 761 bp upstream
 SNP A/G G G A G
rs262791764
MGI SNP Detail		 Chr4:140427235 Cpgi15194 within coordinates of
Gm69527 within coordinates of
Gm69529 within coordinates of
Rr377298 within coordinates of
Tssr39977 678 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C
rs224590311
MGI SNP Detail		 Chr4:140427247 Cpgi15194 within coordinates of
Gm69527 within coordinates of
Gm69529 within coordinates of
Rr377298 within coordinates of
Tssr39971 within coordinates of
Tssr39977 666 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238412561
MGI SNP Detail		 Chr4:140427339 Gm69527 within coordinates of
Gm69529 within coordinates of
Rr377298 within coordinates of
Tssr39977 574 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32775229
MGI SNP Detail		 Chr4:140427470 Gm69527 within coordinates of
Gm69529 within coordinates of
Rr377298 within coordinates of
Rr603518 within coordinates of
Tssr39977 443 bp upstream
 SNP G/T T G G T
rs580689849
MGI SNP Detail		 Chr4:140427555 Gm69527 within coordinates of
Gm69529 within coordinates of
Rr377298 within coordinates of
Rr603518 within coordinates of
Tssr39977 358 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49169561
MGI SNP Detail		 Chr4:140427667 Gm69527 within coordinates of
Gm69529 within coordinates of
Rr377298 within coordinates of
Rr603518 within coordinates of
Tssr39977 246 bp upstream
 SNP A/G A G A
rs32885166
MGI SNP Detail		 Chr4:140427689 Gm69527 within coordinates of
Gm69529 within coordinates of
Rr377298 within coordinates of
Rr603518 within coordinates of
Tssr39977 224 bp upstream
 SNP C/T C T T C
rs32128767
MGI SNP Detail		 Chr4:140427790 Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603518 within coordinates of
Tssr39975 within coordinates of
Tssr39977 123 bp upstream
 SNP A/G G A A G
rs216950170
MGI SNP Detail		 Chr4:140427842 Gm69527 within coordinates of
Rr377298 within coordinates of
Rr603518 within coordinates of
Tssr39977 71 bp upstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G T G G G G
rs229526030
MGI SNP Detail		 Chr4:140427925 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 1 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs255872092
MGI SNP Detail		 Chr4:140427981 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 57 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs32173964
MGI SNP Detail		 Chr4:140427982 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 58 bp downstream
 SNP C/T C C T
rs32637608
MGI SNP Detail		 Chr4:140428008 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 84 bp downstream
 SNP A/C C C A
rs31751959
MGI SNP Detail		 Chr4:140428026 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 102 bp downstream
 SNP C/T C C T
rs217286944
MGI SNP Detail		 Chr4:140428040 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 116 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C A A C A C C C C A C C C C C C C C C C
rs232783226
MGI SNP Detail		 Chr4:140428045 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 121 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
rs259276312
MGI SNP Detail		 Chr4:140428059 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 135 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C G C C C C C C C C C C C C C C G C C C C
rs225421370
MGI SNP Detail		 Chr4:140428106 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 182 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243314459
MGI SNP Detail		 Chr4:140428172 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 248 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262499199
MGI SNP Detail		 Chr4:140428190 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 266 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218256210
MGI SNP Detail		 Chr4:140428295 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 371 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs238119971
MGI SNP Detail		 Chr4:140428370 Gm69527 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603519 within coordinates of
Tssr39977 446 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs260973724
MGI SNP Detail		 Chr4:140428604 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603520 within coordinates of
Tssr39977 680 bp downstream
 SNP C/T C C C C T C T T C C C C C C C C C C C C T C T T C C C T C C C C T T T T C T T C T T T C T C C T C T C
rs32720520
MGI SNP Detail		 Chr4:140428618 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603520 within coordinates of
Tssr39977 694 bp downstream
 SNP A/G G G A
rs248275209
MGI SNP Detail		 Chr4:140428743 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603520 within coordinates of
Tssr39977 819 bp downstream
Tssr39978 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs263744878
MGI SNP Detail		 Chr4:140428748 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Rr377298 within coordinates of
Rr603520 within coordinates of
Tssr39977 824 bp downstream
Tssr39978 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs229960043
MGI SNP Detail		 Chr4:140429069 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1145 bp downstream
 SNP A/T A A A A A A A A A A A T A A T T A T A A A A T T
rs251260277
MGI SNP Detail		 Chr4:140429284 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1360 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs253687814
MGI SNP Detail		 Chr4:140429317 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1393 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs224008423
MGI SNP Detail		 Chr4:140429357 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1433 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs246402423
MGI SNP Detail		 Chr4:140429360 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1436 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs578586894
MGI SNP Detail		 Chr4:140429587 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1663 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs580986859
MGI SNP Detail		 Chr4:140429602 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1678 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs584734888
MGI SNP Detail		 Chr4:140429617 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1693 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs578969526
MGI SNP Detail		 Chr4:140429626 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1702 bp downstream
 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs217328125
MGI SNP Detail		 Chr4:140429686 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1762 bp downstream
 SNP C/G C G G G G G C G G G G G G G G G G G C G G G C G G G G G G G G G G G G G G G G G C G
rs237805946
MGI SNP Detail		 Chr4:140429695 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1771 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs258122935
MGI SNP Detail		 Chr4:140429889 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1965 bp downstream
 SNP A/G G A G A G G G A A A A A G A A G A A G A G G G G G A G G G A G G G
rs213578840
MGI SNP Detail		 Chr4:140429890 Cpgi15195 within coordinates of
Rcc2 within coordinates of
Tssr39977 1966 bp downstream
 SNP C/G G C G C G G G C C C C C G C C G C C G C G G G G G C G G G C G G G
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Showing SNP(s) 1 - 69 of 69
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory