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Mouse SNP Summary
Symbol
Name
ID 		Tssr40591
transcription start site region 40591
MGI:5968358

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240673201
MGI SNP Detail		 Chr4:154719687 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1911 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A A G G G A G G G G G A G G G A G A A G G G G G G G G G G G
rs260054355
MGI SNP Detail		 Chr4:154719733 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1865 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A A G G G A G G G G G A G G G A G A A G G G G G G G G G G G G
rs226720714
MGI SNP Detail		 Chr4:154719794 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1804 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A A T T T A T T T T T A T T T A T A A T T T T T T T T T T T T
rs240810750
MGI SNP Detail		 Chr4:154719820 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1778 bp upstream
 SNP C/G C C C C C C G G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C C C G C
rs254597298
MGI SNP Detail		 Chr4:154719821 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1777 bp upstream
 SNP C/T C C C C C C T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T C
rs219387099
MGI SNP Detail		 Chr4:154719837 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1761 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs238243629
MGI SNP Detail		 Chr4:154719895 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1703 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T T C C C T C C C C C T C C C T C T T C C C C C C C C C C C C
rs257114363
MGI SNP Detail		 Chr4:154719901 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1697 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T T C C C T C C C C C T C C C T C T T C C C C C C C C C C C C
rs232275382
MGI SNP Detail		 Chr4:154719919 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1679 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs259328366
MGI SNP Detail		 Chr4:154719965 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1633 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264513071
MGI SNP Detail		 Chr4:154719995 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1603 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228281419
MGI SNP Detail		 Chr4:154720070 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1528 bp upstream
 SNP A/G A A A A A G G A A A A A A A A A A A G A G G G A A A G A G A A A G A A A G A G G A A A G A A A G A A G
rs244393691
MGI SNP Detail		 Chr4:154720314 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1284 bp upstream
 SNP A/G A A A A A A G G A A A A A A A A A A G A A G G A A A G A A A A G A A A G A G G A A A G A A A G A A G A
rs213987799
MGI SNP Detail		 Chr4:154720316 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1282 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs233370539
MGI SNP Detail		 Chr4:154720320 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1278 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs246881869
MGI SNP Detail		 Chr4:154720338 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1260 bp upstream
 SNP A/G G G G G G G A A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G
rs216143893
MGI SNP Detail		 Chr4:154720343 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1255 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T T C C C T C C C C T C C C T C T T C C C C C C C C C C C C
rs239782221
MGI SNP Detail		 Chr4:154720478 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1120 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263643928
MGI SNP Detail		 Chr4:154720598 5930403L14Rik within coordinates of
Cpgi15444 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 1000 bp upstream
 SNP C/G G G G G G G C C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G
rs226496716
MGI SNP Detail		 Chr4:154720853 Cpgi15444 within coordinates of
Gm57100 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 745 bp upstream
 SNP A/C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235850915
MGI SNP Detail		 Chr4:154720984 Cpgi15444 within coordinates of
Gm57100 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 614 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C
rs584555327
MGI SNP Detail		 Chr4:154721094 Cpgi15444 within coordinates of
Gm57100 within coordinates of
Prdm16 within coordinates of
Rr100673 within coordinates of
Tssr40591 504 bp upstream
 SNP C/T C C C C T C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248644749
MGI SNP Detail		 Chr4:154721750 Cpgi15444 within coordinates of
Gm57100 within coordinates of
Rr100673 within coordinates of
Tssr40591 145 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G G A A A G A A A A A G A A A G A G G A A A A A A A G A A A A
rs587133513
MGI SNP Detail		 Chr4:154721944 Cpgi15444 within coordinates of
Rr100673 within coordinates of
Tssr40591 339 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C
rs219335612
MGI SNP Detail		 Chr4:154722090 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 485 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238319217
MGI SNP Detail		 Chr4:154722118 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 513 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251214774
MGI SNP Detail		 Chr4:154722157 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 552 bp downstream
 SNP C/T T T T T T C C T T T T T T T T T T T C T T C C T T T C T T T T C T T T C T C C T T T C T T T C T T C T
rs224986292
MGI SNP Detail		 Chr4:154722212 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 607 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247368255
MGI SNP Detail		 Chr4:154722318 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 713 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs266185361
MGI SNP Detail		 Chr4:154722342 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 737 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C A C C C A C C C C C A C C C A C A C C C C C C C C C C C C C
rs227941170
MGI SNP Detail		 Chr4:154722377 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 772 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T T C C C T C C C C C T C C C T C T T C C C C C C C C C C C C
rs238117873
MGI SNP Detail		 Chr4:154722404 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 799 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T T C C C T C C C C C T C C C T C T T C C C C C C C C C C C C
rs257587240
MGI SNP Detail		 Chr4:154722411 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 806 bp downstream
 SNP A/G A A A A A A G G A A A A A A A A A A A G A A G G A A A G A A A A A G A A A G A G G A A A G A A A G A A G A
rs226644197
MGI SNP Detail		 Chr4:154722503 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 898 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs246826139
MGI SNP Detail		 Chr4:154722554 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 949 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs217302531
MGI SNP Detail		 Chr4:154722563 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 958 bp downstream
 SNP A/G A A A A A A G G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A
rs234410308
MGI SNP Detail		 Chr4:154722571 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 966 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255012255
MGI SNP Detail		 Chr4:154722578 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 973 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G G A A A G A A A A A G A A A G A G G A A A A A A A G A A A A
rs218796069
MGI SNP Detail		 Chr4:154722600 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 995 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs229775798
MGI SNP Detail		 Chr4:154722665 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1060 bp downstream
 SNP A/G G G G G G G A A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G A G
rs248712499
MGI SNP Detail		 Chr4:154722667 Cpgi15444 within coordinates of
Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1062 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs213319391
MGI SNP Detail		 Chr4:154722700 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1095 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231850920
MGI SNP Detail		 Chr4:154722721 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1116 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G
rs251201839
MGI SNP Detail		 Chr4:154722769 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1164 bp downstream
 SNP C/T C C C C C C T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T C
rs224995983
MGI SNP Detail		 Chr4:154722812 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1207 bp downstream
 SNP C/T C C C C C C T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C T C
rs249965665
MGI SNP Detail		 Chr4:154722890 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1285 bp downstream
 SNP A/G/T G G G G G G G G G G G G G G G G G G G A G G T G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G
rs260812299
MGI SNP Detail		 Chr4:154722891 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1286 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219968765
MGI SNP Detail		 Chr4:154722898 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1293 bp downstream
 SNP A/G G G G G G G A A G G G G G G G G G G G G G G A A G G G A G G G G G A G G G A G A A G G G A G G G G G G A G
rs238206436
MGI SNP Detail		 Chr4:154722988 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1383 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs257722541
MGI SNP Detail		 Chr4:154723073 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1468 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A A C C C A C C C C C A C C C A C A A C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226586454
MGI SNP Detail		 Chr4:154723111 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1506 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs240639609
MGI SNP Detail		 Chr4:154723169 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1564 bp downstream
 SNP A/G G G G G G G A A G G G G G G G G G G G A G G A A G G G A G G G G G A G G G A G A A G G G A G G G A G G A G
rs265809144
MGI SNP Detail		 Chr4:154723200 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1595 bp downstream
 SNP C/T T T T T T T C C T T T T T T T T T T T C T T C C T T T C T T T T T C T T T C T C C T T T C T T T T T T C T
rs233497571
MGI SNP Detail		 Chr4:154723249 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1644 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs260446072
MGI SNP Detail		 Chr4:154723277 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1672 bp downstream
 SNP G/T G G G G G G T T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G T G
rs212261032
MGI SNP Detail		 Chr4:154723303 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1698 bp downstream
 SNP A/G G G G G G G A A G G G G G G G G G G G G G G A A G G G A G G G G G A G G G A G A A G G G A G G G A G G A G
rs224715079
MGI SNP Detail		 Chr4:154723321 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1716 bp downstream
 SNP A/G A A A A A A G G A A A A A A A A A A A G A G G G A A A G A G A A A G A A A G A G G A A A G A A A G A A G
rs242815319
MGI SNP Detail		 Chr4:154723367 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1762 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213487017
MGI SNP Detail		 Chr4:154723546 Prdm16os within coordinates of
Rr100673 within coordinates of
Tssr40591 1941 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
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Showing SNP(s) 1 - 59 of 59
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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