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Mouse SNP Summary
Symbol
Name
ID 		Tssr41190
transcription start site region 41190
MGI:5968957

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Showing SNP(s) 1 - 59 of 59

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs263333615
MGI SNP Detail		 Chr4:34549466 Gm70378 within coordinates of
Tssr41190 1971 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs233441387
MGI SNP Detail		 Chr4:34549526 Gm70378 within coordinates of
Tssr41190 1911 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs245217731
MGI SNP Detail		 Chr4:34549621 Gm70378 within coordinates of
Tssr41190 1816 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G G G A G A A A A A A A A G A A A
rs214772008
MGI SNP Detail		 Chr4:34549741 Gm70378 within coordinates of
Tssr41190 1696 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs224541209
MGI SNP Detail		 Chr4:34549832 Gm70378 within coordinates of
Rr100806 within coordinates of
Tssr41190 1605 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243232567
MGI SNP Detail		 Chr4:34549876 Gm70378 within coordinates of
Rr100806 within coordinates of
Tssr41190 1561 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs212824220
MGI SNP Detail		 Chr4:34549939 Gm70378 within coordinates of
Rr100806 within coordinates of
Tssr41190 1498 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
rs239304724
MGI SNP Detail		 Chr4:34549952 Gm70378 within coordinates of
Rr100806 within coordinates of
Tssr41190 1485 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs581728958
MGI SNP Detail		 Chr4:34550366 Gm70378 within coordinates of
Rr100806 within coordinates of
Rr367598 within coordinates of
Tssr41190 1071 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs259893315
MGI SNP Detail		 Chr4:34550373 Gm70378 within coordinates of
Rr100806 within coordinates of
Rr367598 within coordinates of
Tssr41190 1064 bp downstream
 SNP C/T C C T T C C T T C C C T T C C C T T T C C C C C C T T T C C C C C C C T C C T C C T C
rs212915102
MGI SNP Detail		 Chr4:34550450 Cpgi14119 within coordinates of
Gm70378 within coordinates of
Rr100806 within coordinates of
Rr367598 within coordinates of
Tssr41190 987 bp downstream
 SNP C/T T C
rs233471581
MGI SNP Detail		 Chr4:34550513 Cpgi14119 within coordinates of
Gm70378 within coordinates of
Rr100806 within coordinates of
Rr367598 within coordinates of
Tssr41190 924 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C T T T C T C C C C C C C T T C C T
rs249533814
MGI SNP Detail		 Chr4:34550657 Cpgi14119 within coordinates of
Gm68522 within coordinates of
Rr100806 within coordinates of
Tssr36766 within coordinates of
Tssr41190 780 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs220032083
MGI SNP Detail		 Chr4:34550787 Cpgi14119 within coordinates of
Gm68522 within coordinates of
Rr100806 within coordinates of
Tssr41190 650 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229950066
MGI SNP Detail		 Chr4:34550854 Cpgi14119 within coordinates of
Rr100806 within coordinates of
Tssr41190 583 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256385145
MGI SNP Detail		 Chr4:34551179 Akirin2 within coordinates of
Cpgi14119 within coordinates of
Rr100806 within coordinates of
Tssr41190 258 bp downstream
 SNP A/C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs226264476
MGI SNP Detail		 Chr4:34551212 Akirin2 within coordinates of
Cpgi14119 within coordinates of
Rr100806 within coordinates of
Tssr41190 225 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248579241
MGI SNP Detail		 Chr4:34551257 Akirin2 within coordinates of
Cpgi14119 within coordinates of
Rr100806 within coordinates of
Tssr41190 180 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs265551535
MGI SNP Detail		 Chr4:34551374 Akirin2 within coordinates of
Cpgi14119 within coordinates of
Rr100806 within coordinates of
Tssr41190 63 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G
rs222014213
MGI SNP Detail		 Chr4:34551528 Akirin2 within coordinates of
Cpgi14119 within coordinates of
Rr100806 within coordinates of
Tssr41190 81 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs239196693
MGI SNP Detail		 Chr4:34551552 Akirin2 within coordinates of
Cpgi14119 within coordinates of
Rr100806 within coordinates of
Tssr41190 105 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A A A A T T T A T A A A A A A A A T A A A
rs27788478
MGI SNP Detail		 Chr4:34551884 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 437 bp upstream
 SNP C/T C C T C C T C C T T T T
rs224595028
MGI SNP Detail		 Chr4:34552279 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 832 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32691660
MGI SNP Detail		 Chr4:34552447 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1000 bp upstream
 SNP C/T C C T C T C T
rs584845951
MGI SNP Detail		 Chr4:34552536 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1089 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27788477
MGI SNP Detail		 Chr4:34552569 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1122 bp upstream
 SNP A/G G G G G G A A G
rs233679604
MGI SNP Detail		 Chr4:34552604 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1157 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31845740
MGI SNP Detail		 Chr4:34552684 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1237 bp upstream
 SNP G/T T G T G T G
rs215916378
MGI SNP Detail		 Chr4:34552742 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1295 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233347703
MGI SNP Detail		 Chr4:34552770 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1323 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs243730875
MGI SNP Detail		 Chr4:34552881 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1434 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs50691563
MGI SNP Detail		 Chr4:34552883 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1436 bp upstream
 SNP T T
rs230005080
MGI SNP Detail		 Chr4:34552889 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1442 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46115487
MGI SNP Detail		 Chr4:34552899 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1452 bp upstream
 SNP C C
rs225687593
MGI SNP Detail		 Chr4:34552953 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1506 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs243153980
MGI SNP Detail		 Chr4:34552960 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1513 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs47984639
MGI SNP Detail		 Chr4:34552962 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1515 bp upstream
 SNP C/T T C T
rs222068899
MGI SNP Detail		 Chr4:34552966 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1519 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs239054124
MGI SNP Detail		 Chr4:34553056 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1609 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G A A A G A G G G G G G G A A G G G
rs27788476
MGI SNP Detail		 Chr4:34553065 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1618 bp upstream
 SNP C/T T T T C C T
rs218395314
MGI SNP Detail		 Chr4:34553163 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1716 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs242447803
MGI SNP Detail		 Chr4:34553184 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1737 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs266025967
MGI SNP Detail		 Chr4:34553216 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1769 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs234194283
MGI SNP Detail		 Chr4:34553227 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1780 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579018541
MGI SNP Detail		 Chr4:34553236 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1789 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259803848
MGI SNP Detail		 Chr4:34553237 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1790 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256834508
MGI SNP Detail		 Chr4:34553249 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1802 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227390470
MGI SNP Detail		 Chr4:34553255 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1808 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243601436
MGI SNP Detail		 Chr4:34553269 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1822 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs214328054
MGI SNP Detail		 Chr4:34553273 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1826 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223389443
MGI SNP Detail		 Chr4:34553285 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1838 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs46479035
MGI SNP Detail		 Chr4:34553288 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1841 bp upstream
 SNP C/T C C T C
rs218101286
MGI SNP Detail		 Chr4:34553290 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1843 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240260482
MGI SNP Detail		 Chr4:34553303 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1856 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262958769
MGI SNP Detail		 Chr4:34553309 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1862 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs27788475
MGI SNP Detail		 Chr4:34553336 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1889 bp upstream
 SNP A/C C A C C A C C A A A A
rs232041249
MGI SNP Detail		 Chr4:34553345 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1898 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C T T T C T C C C C C C C T T C C C
rs252222874
MGI SNP Detail		 Chr4:34553349 Akirin2 within coordinates of
Rr100806 within coordinates of
Tssr41190 1902 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs582184589
MGI SNP Detail		 Chr4:34553423 Akirin2 within coordinates of
Tssr41190 1976 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 59 of 59
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory