About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr41365
transcription start site region 41365
MGI:5969132

<< first < prev1 next > last >>
Showing SNP(s) 1 - 51 of 51

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs262686871
MGI SNP Detail
Chr4:41638509 Enho within coordinates of
Tssr41365 1873 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220918020
MGI SNP Detail
Chr4:41638517 Enho within coordinates of
Tssr41365 1865 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237516782
MGI SNP Detail
Chr4:41638559 Enho within coordinates of
Tssr41365 1823 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C T C C C
rs252833363
MGI SNP Detail
Chr4:41638606 Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 1776 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222956496
MGI SNP Detail
Chr4:41638663 Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 1719 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C
rs239439998
MGI SNP Detail
Chr4:41638732 Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 1650 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs252097683
MGI SNP Detail
Chr4:41638770 Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 1612 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222253469
MGI SNP Detail
Chr4:41638939 Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 1443 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244220416
MGI SNP Detail
Chr4:41639027 Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 1355 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs264661326
MGI SNP Detail
Chr4:41639570 Cpgi14161 within coordinates of
Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 812 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs228740460
MGI SNP Detail
Chr4:41639733 Cpgi14161 within coordinates of
Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 649 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241947361
MGI SNP Detail
Chr4:41639783 Cpgi14161 within coordinates of
Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 599 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G A G G G G G G G A G G G
rs261194256
MGI SNP Detail
Chr4:41639866 Cpgi14161 within coordinates of
Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 516 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C
rs227210219
MGI SNP Detail
Chr4:41639871 Cpgi14161 within coordinates of
Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 511 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247091669
MGI SNP Detail
Chr4:41639928 Cpgi14161 within coordinates of
Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 454 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G T G G G G G G G G T G G G
rs213481741
MGI SNP Detail
Chr4:41640009 Cpgi14161 within coordinates of
Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 373 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs582013645
MGI SNP Detail
Chr4:41640194 Cpgi14161 within coordinates of
Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41359 within coordinates of
Tssr41365 188 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T
rs586137239
MGI SNP Detail
Chr4:41640200 Cpgi14161 within coordinates of
Enho within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41359 within coordinates of
Tssr41365 182 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T G T T T T T T G T T
rs230838864
MGI SNP Detail
Chr4:41640354 Cpgi14161 within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41363 within coordinates of
Tssr41365 28 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248877559
MGI SNP Detail
Chr4:41640387 Cpgi14161 within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 within coordinates of
SNP A/C/T A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A A A A A A A C A A A A A A T C A A A
rs212814946
MGI SNP Detail
Chr4:41640610 Cpgi14161 within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 208 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs231071033
MGI SNP Detail
Chr4:41640668 Cpgi14161 within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 266 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252872183
MGI SNP Detail
Chr4:41640728 Cpgi14161 within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 326 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs217543871
MGI SNP Detail
Chr4:41640746 Cpgi14161 within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 344 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233098917
MGI SNP Detail
Chr4:41640772 Cpgi14161 within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 370 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252149833
MGI SNP Detail
Chr4:41640774 Cpgi14161 within coordinates of
Gm12406 within coordinates of
Rr100857 within coordinates of
Tssr41365 372 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31831600
MGI SNP Detail
Chr4:41640820 Gm12406 within coordinates of
Tssr41365 418 bp upstream
SNP A/G G A G A G A
rs247031746
MGI SNP Detail
Chr4:41641099 Gm12406 within coordinates of
Tssr41365 697 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255584799
MGI SNP Detail
Chr4:41641100 Gm12406 within coordinates of
Tssr41365 698 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221157633
MGI SNP Detail
Chr4:41641117 Gm12406 within coordinates of
Tssr41365 715 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs242003830
MGI SNP Detail
Chr4:41641168 Gm12406 within coordinates of
Tssr41365 766 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261243815
MGI SNP Detail
Chr4:41641193 Gm12406 within coordinates of
Tssr41365 791 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227267091
MGI SNP Detail
Chr4:41641234 Gm12406 within coordinates of
Tssr41365 832 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241155979
MGI SNP Detail
Chr4:41641291 Gm12406 within coordinates of
Tssr41365 889 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs265027568
MGI SNP Detail
Chr4:41641392 Gm12406 within coordinates of
Tssr41365 990 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G A G G G
rs230709064
MGI SNP Detail
Chr4:41641539 Gm12406 within coordinates of
Tssr41365 1137 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs252170992
MGI SNP Detail
Chr4:41641632 Gm12406 within coordinates of
Tssr41365 1230 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs212535027
MGI SNP Detail
Chr4:41641920 Gm12406 within coordinates of
Tssr41365 1518 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs582880376
MGI SNP Detail
Chr4:41641993 Gm12406 within coordinates of
Tssr41365 1591 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227989135
MGI SNP Detail
Chr4:41642009 Gm12406 within coordinates of
Tssr41365 1607 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs247089156
MGI SNP Detail
Chr4:41642026 Gm12406 within coordinates of
Tssr41365 1624 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A A G A A A
rs217596758
MGI SNP Detail
Chr4:41642030 Gm12406 within coordinates of
Tssr41365 1628 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs233155119
MGI SNP Detail
Chr4:41642097 Gm12406 within coordinates of
Tssr41365 1695 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A A A A A A A A G A A A A A A A G G A A A
rs259756620
MGI SNP Detail
Chr4:41642101 Gm12406 within coordinates of
Tssr41365 1699 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs214492180
MGI SNP Detail
Chr4:41642102 Gm12406 within coordinates of
Tssr41365 1700 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32342945
MGI SNP Detail
Chr4:41642111 Gm12406 within coordinates of
Tssr41365 1709 bp upstream
SNP C/T C C T C T T T
rs261018724
MGI SNP Detail
Chr4:41642262 Gm12406 within coordinates of
Tssr41365 1860 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs218968794
MGI SNP Detail
Chr4:41642275 Gm12406 within coordinates of
Tssr41365 1873 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586256086
MGI SNP Detail
Chr4:41642326 Gm12406 within coordinates of
Tssr41365 1924 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235596397
MGI SNP Detail
Chr4:41642330 Gm12406 within coordinates of
Tssr41365 1928 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255298410
MGI SNP Detail
Chr4:41642362 Gm12406 within coordinates of
Tssr41365 1960 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
<< first < prev1 next > last >>
Showing SNP(s) 1 - 51 of 51

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

Building initial tooltip...