About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID 		Tssr42417
transcription start site region 42417
MGI:5970184

<< first < prev1 next > last >>
Showing SNP(s) 1 - 67 of 67

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs241979214
MGI SNP Detail		 Chr4:91258221 Elavl2 within coordinates of
Tssr42417 2000 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs212541981
MGI SNP Detail		 Chr4:91258235 Elavl2 within coordinates of
Tssr42417 1986 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235900933
MGI SNP Detail		 Chr4:91258272 Elavl2 within coordinates of
Tssr42417 1949 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs255994571
MGI SNP Detail		 Chr4:91258355 Elavl2 within coordinates of
Tssr42417 1866 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215468292
MGI SNP Detail		 Chr4:91258389 Elavl2 within coordinates of
Tssr42417 1832 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240253843
MGI SNP Detail		 Chr4:91258397 Elavl2 within coordinates of
Tssr42417 1824 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259745601
MGI SNP Detail		 Chr4:91258458 Elavl2 within coordinates of
Tssr42417 1763 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223030550
MGI SNP Detail		 Chr4:91258477 Elavl2 within coordinates of
Tssr42417 1744 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs236786761
MGI SNP Detail		 Chr4:91258490 Elavl2 within coordinates of
Tssr42417 1731 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250030026
MGI SNP Detail		 Chr4:91258553 Elavl2 within coordinates of
Tssr42417 1668 bp downstream
 SNP A/C C C C C C C A A C C A A C C C C C C C C A A C C C C C C C C C C A C A A A C C A C C C C C A C C C C C C C
rs33013118
MGI SNP Detail		 Chr4:91258600 Elavl2 within coordinates of
Tssr42417 1621 bp downstream
 SNP C/T C T T T
rs243275128
MGI SNP Detail		 Chr4:91258604 Elavl2 within coordinates of
Tssr42417 1617 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs265333296
MGI SNP Detail		 Chr4:91258605 Elavl2 within coordinates of
Tssr42417 1616 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs224382973
MGI SNP Detail		 Chr4:91258629 Elavl2 within coordinates of
Tssr42417 1592 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs248750639
MGI SNP Detail		 Chr4:91258668 Elavl2 within coordinates of
Tssr42417 1553 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs258875191
MGI SNP Detail		 Chr4:91258694 Elavl2 within coordinates of
Tssr42417 1527 bp downstream
 SNP A/G G G G G G G A A G G A A G G G G G G G G A A G G G G G G G G G G A G A A A G G A G G G G G A G G G G G G G
rs229147324
MGI SNP Detail		 Chr4:91258779 Elavl2 within coordinates of
Tssr42417 1442 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs235821295
MGI SNP Detail		 Chr4:91258783 Elavl2 within coordinates of
Tssr42417 1438 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32666485
MGI SNP Detail		 Chr4:91258784 Elavl2 within coordinates of
Tssr42417 1437 bp downstream
 SNP A/G A G G G
rs229800607
MGI SNP Detail		 Chr4:91258786 Elavl2 within coordinates of
Tssr42417 1435 bp downstream
 SNP A/G A A A A A A G G A A G G A A A A A A A A G G A A A A A A A A A A G A G G G A A G A A A A A G A A A A A A A
rs582456056
MGI SNP Detail		 Chr4:91258798 Elavl2 within coordinates of
Tssr42417 1423 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs584716867
MGI SNP Detail		 Chr4:91258814 Elavl2 within coordinates of
Tssr42417 1407 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251194776
MGI SNP Detail		 Chr4:91258829 Elavl2 within coordinates of
Tssr42417 1392 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs32854654
MGI SNP Detail		 Chr4:91258882 Elavl2 within coordinates of
Tssr42417 1339 bp downstream
 SNP A/G G A A A
rs247482308
MGI SNP Detail		 Chr4:91258928 Elavl2 within coordinates of
Tssr42417 1293 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216904995
MGI SNP Detail		 Chr4:91258954 Elavl2 within coordinates of
Tssr42417 1267 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236701707
MGI SNP Detail		 Chr4:91258965 Elavl2 within coordinates of
Tssr42417 1256 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs249991875
MGI SNP Detail		 Chr4:91258979 Elavl2 within coordinates of
Tssr42417 1242 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs213278164
MGI SNP Detail		 Chr4:91258984 Elavl2 within coordinates of
Tssr42417 1237 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs238115319
MGI SNP Detail		 Chr4:91258992 Elavl2 within coordinates of
Tssr42417 1229 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257955134
MGI SNP Detail		 Chr4:91259189 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 1032 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs224376117
MGI SNP Detail		 Chr4:91259313 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 908 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246603961
MGI SNP Detail		 Chr4:91259372 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 849 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31830050
MGI SNP Detail		 Chr4:91259409 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 812 bp downstream
 SNP A/G A G G G
rs222548581
MGI SNP Detail		 Chr4:91259567 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 654 bp downstream
 SNP C/T C C C C C C T T C C T C C C C C C C C T T C C C C C C C C C C T C T T T C C T C C C C C T C C C C C C C
rs235788432
MGI SNP Detail		 Chr4:91259635 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 586 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254562904
MGI SNP Detail		 Chr4:91259642 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 579 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229914254
MGI SNP Detail		 Chr4:91259663 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 558 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246469154
MGI SNP Detail		 Chr4:91259688 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 533 bp downstream
 SNP C/T C C T T T C C T T C C T T T T T T T C C C C T T T T C T T C C C C C C T T C C T C T T C T T C T T C C
rs263024528
MGI SNP Detail		 Chr4:91259709 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 512 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs232734954
MGI SNP Detail		 Chr4:91259879 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 342 bp downstream
 SNP C/T C T T T T T T T T T T T T T T T T C T T C T T T T C T T T C T C T T T T T T C T C T T T T T C T T T
rs247770250
MGI SNP Detail		 Chr4:91259893 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Rr595259 within coordinates of
Tssr42417 328 bp downstream
 SNP C/T C T T T C C T T C T T T T T T T C C T C T T T T C T T T C C C C C T T C C T C T T C T T C T T T
rs217241736
MGI SNP Detail		 Chr4:91259926 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 295 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs229469869
MGI SNP Detail		 Chr4:91260097 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 124 bp downstream
 SNP A/G G G G G A G G A A G G G G G G A A G G G G G G G G G A A A G G A G G G G G A G G G G G G
rs243789397
MGI SNP Detail		 Chr4:91260210 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595258 within coordinates of
Tssr42417 11 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs32449654
MGI SNP Detail		 Chr4:91260579 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595260 within coordinates of
Tssr42417 342 bp upstream
 SNP A/G G A A
rs236584439
MGI SNP Detail		 Chr4:91260635 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595260 within coordinates of
Tssr42417 398 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs262676923
MGI SNP Detail		 Chr4:91260648 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595260 within coordinates of
Tssr42417 411 bp upstream
 SNP C/T T T T T T T C C T T C C T T T T T T T T C T T T T T T T T T T C T C C C T T C T T T T T C T T T T T T T
rs215804422
MGI SNP Detail		 Chr4:91260748 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Rr595260 within coordinates of
Tssr42417 511 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs233678526
MGI SNP Detail		 Chr4:91260836 Cpgi14444 within coordinates of
Elavl2 within coordinates of
Tssr42417 599 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252751380
MGI SNP Detail		 Chr4:91260846 Elavl2 within coordinates of
Tssr42417 609 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs222879465
MGI SNP Detail		 Chr4:91260855 Elavl2 within coordinates of
Tssr42417 618 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs229819942
MGI SNP Detail		 Chr4:91260960 Elavl2 within coordinates of
Tssr42417 723 bp upstream
 SNP A/C C C C A A A A A A A A A A A A A A A A A A A C A A A A C A A A C A C A A A A A A C A C A A A A A A A A A A
rs256163765
MGI SNP Detail		 Chr4:91261041 Elavl2 within coordinates of
Tssr42417 804 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs222045111
MGI SNP Detail		 Chr4:91261342 Elavl2 within coordinates of
Rr595261 within coordinates of
Tssr42417 1105 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs244066100
MGI SNP Detail		 Chr4:91261582 Elavl2 within coordinates of
Mir6402 within coordinates of
Rr595261 within coordinates of
Tssr42417 1345 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32698459
MGI SNP Detail		 Chr4:91261636 Elavl2 within coordinates of
Tssr42417 1399 bp upstream
 SNP A/G A G G
rs582719771
MGI SNP Detail		 Chr4:91261770 Elavl2 within coordinates of
Tssr42417 1533 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs224653982
MGI SNP Detail		 Chr4:91261812 Elavl2 within coordinates of
Tssr42417 1575 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241749660
MGI SNP Detail		 Chr4:91261826 Elavl2 within coordinates of
Tssr42417 1589 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs261055321
MGI SNP Detail		 Chr4:91261838 Elavl2 within coordinates of
Tssr42417 1601 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224032451
MGI SNP Detail		 Chr4:91261845 Elavl2 within coordinates of
Tssr42417 1608 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs243762953
MGI SNP Detail		 Chr4:91261870 Elavl2 within coordinates of
Tssr42417 1633 bp upstream
 SNP A/G G A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A A A A A A A A A A
rs31787799
MGI SNP Detail		 Chr4:91261921 Elavl2 within coordinates of
Tssr42417 1684 bp upstream
 SNP A/G A G G G
rs230583555
MGI SNP Detail		 Chr4:91262010 Elavl2 within coordinates of
Tssr42417 1773 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251864976
MGI SNP Detail		 Chr4:91262165 Elavl2 within coordinates of
Tssr42417 1928 bp upstream
 SNP A/G A A A G G G G G G G G G G G G G G G G A G G A G G G G A G A G A G A G G G G G G A G A G G G G G A G G G G
rs216715548
MGI SNP Detail		 Chr4:91262181 Elavl2 within coordinates of
Tssr42417 1944 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 67 of 67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory