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Mouse SNP Summary
Symbol
Name
ID 		Tssr42966
transcription start site region 42966
MGI:5970733

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Showing SNP(s) 1 - 75 of 75

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261792089
MGI SNP Detail		 Chr4:117037867 Kif2c within coordinates of
Tssr42966 1953 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T A A T T T T T A T T T T T T A T T T T T T T T T T T T
rs27512756
MGI SNP Detail		 Chr4:117037874 Kif2c within coordinates of
Tssr42966 1946 bp downstream
 SNP A/G G G G G G G G G G G A G G A G
rs48737720
MGI SNP Detail		 Chr4:117037950 Kif2c within coordinates of
Tssr42966 1870 bp downstream
 SNP A/G G A
rs584586640
MGI SNP Detail		 Chr4:117037959 Kif2c within coordinates of
Tssr42966 1861 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs257165864
MGI SNP Detail		 Chr4:117037987 Kif2c within coordinates of
Tssr42966 1833 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587282634
MGI SNP Detail		 Chr4:117038056 Kif2c within coordinates of
Tssr42966 1764 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs581463513
MGI SNP Detail		 Chr4:117038057 Kif2c within coordinates of
Tssr42966 1763 bp downstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs584807705
MGI SNP Detail		 Chr4:117038096 Kif2c within coordinates of
Tssr42966 1724 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs579257638
MGI SNP Detail		 Chr4:117038146 Kif2c within coordinates of
Tssr42966 1674 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582769309
MGI SNP Detail		 Chr4:117038161 Kif2c within coordinates of
Tssr42966 1659 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs584147549
MGI SNP Detail		 Chr4:117038200 Kif2c within coordinates of
Tssr42966 1620 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs578364553
MGI SNP Detail		 Chr4:117038263 Kif2c within coordinates of
Tssr42966 1557 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs45765515
MGI SNP Detail		 Chr4:117038281 Kif2c within coordinates of
Tssr42966 1539 bp downstream
 SNP G G
rs582335790
MGI SNP Detail		 Chr4:117038310 Kif2c within coordinates of
Tssr42966 1510 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs48979685
MGI SNP Detail		 Chr4:117038323 Kif2c within coordinates of
Tssr42966 1497 bp downstream
 SNP T T
rs49253103
MGI SNP Detail		 Chr4:117038360 Kif2c within coordinates of
Tssr42966 1460 bp downstream
 SNP G G
rs585916361
MGI SNP Detail		 Chr4:117038363 Kif2c within coordinates of
Tssr42966 1457 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs240693708
MGI SNP Detail		 Chr4:117038376 Kif2c within coordinates of
Tssr42966 1444 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255428858
MGI SNP Detail		 Chr4:117038397 Kif2c within coordinates of
Tssr42966 1423 bp downstream
 SNP A/C A A A C A A A A A A A A A A A A A A A A A A C C C A C C A A A A C C A C A A A A C A C A C A A A C C C C A
rs222575675
MGI SNP Detail		 Chr4:117038432 Kif2c within coordinates of
Tssr42966 1388 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs237919421
MGI SNP Detail		 Chr4:117038731 Kif2c within coordinates of
Tssr42966 1089 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs264591783
MGI SNP Detail		 Chr4:117038784 Kif2c within coordinates of
Tssr42966 1036 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G A A G G G G G A G G G G G G A G G G G G G G G G G G G
rs230890287
MGI SNP Detail		 Chr4:117038798 Kif2c within coordinates of
Tssr42966 1022 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27512755
MGI SNP Detail		 Chr4:117038825 Kif2c within coordinates of
Tssr42966 995 bp downstream
 SNP C/T T T C T T T T T T C T T C T T C C
rs263409160
MGI SNP Detail		 Chr4:117038898 Kif2c within coordinates of
Tssr42966 922 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs27512754
MGI SNP Detail		 Chr4:117038917 Kif2c within coordinates of
Tssr42966 903 bp downstream
 SNP A/G G G G G G G G G G G A G G A G
rs247262210
MGI SNP Detail		 Chr4:117039079 Kif2c within coordinates of
Tssr42966 741 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27512753
MGI SNP Detail		 Chr4:117039098 Kif2c within coordinates of
Tssr42966 722 bp downstream
 SNP A/T T T A T T T T T T A T T A T T A A
rs578603402
MGI SNP Detail		 Chr4:117039110 Kif2c within coordinates of
Tssr42966 710 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582593352
MGI SNP Detail		 Chr4:117039120 Kif2c within coordinates of
Tssr42966 700 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32082454
MGI SNP Detail		 Chr4:117039241 Kif2c within coordinates of
Tssr42966 579 bp downstream
 SNP A/G G G A G A
rs27512752
MGI SNP Detail		 Chr4:117039393 Cpgi14654 within coordinates of
Kif2c within coordinates of
Tssr42966 427 bp downstream
 SNP C/T C C C C C C C C C C T C C C C
rs228774811
MGI SNP Detail		 Chr4:117039402 Cpgi14654 within coordinates of
Kif2c within coordinates of
Tssr42966 418 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250182393
MGI SNP Detail		 Chr4:117039586 Cpgi14654 within coordinates of
Kif2c within coordinates of
Tssr42966 234 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C T T C C C C C T C C C C C C T C C C C C C C C C C C C
rs212543135
MGI SNP Detail		 Chr4:117039598 Cpgi14654 within coordinates of
Kif2c within coordinates of
Tssr42966 222 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs237424021
MGI SNP Detail		 Chr4:117039887 Cpgi14654 within coordinates of
Rr398412 within coordinates of
Tssr42966 54 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs255674480
MGI SNP Detail		 Chr4:117039898 Cpgi14654 within coordinates of
Rr398412 within coordinates of
Tssr42966 65 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs585901278
MGI SNP Detail		 Chr4:117039943 Cpgi14654 within coordinates of
Rr398412 within coordinates of
Tssr42966 110 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T G G T T T T T G T T T T T T G T T T T T T T T T T T
rs233995739
MGI SNP Detail		 Chr4:117039987 Cpgi14654 within coordinates of
Rr398412 within coordinates of
Tssr42966 154 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs255457417
MGI SNP Detail		 Chr4:117040011 Cpgi14654 within coordinates of
Tssr42966 178 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs222880632
MGI SNP Detail		 Chr4:117040042 Cpgi14654 within coordinates of
Tssr42966 209 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T C C T T T T T C T T T T T T C T T T T T T T T T T T T
rs237385021
MGI SNP Detail		 Chr4:117040056 Cpgi14654 within coordinates of
Tssr42966 223 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs255392127
MGI SNP Detail		 Chr4:117040092 Cpgi14654 within coordinates of
Tssr42966 259 bp upstream
 SNP A/G A A A G A A A A A A A A A A A A A A A G A A G G G A G G A A A A G G A G A A A A G A G A G A A A G G G G G
rs222942023
MGI SNP Detail		 Chr4:117040227 Tssr42966 394 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs243174305
MGI SNP Detail		 Chr4:117040234 Tssr42966 401 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258065138
MGI SNP Detail		 Chr4:117040248 Tssr42966 415 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220491512
MGI SNP Detail		 Chr4:117040346 Tssr42966 513 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs580515897
MGI SNP Detail		 Chr4:117040365 Tssr42966 532 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241231569
MGI SNP Detail		 Chr4:117040414 Tssr42966 581 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258577965
MGI SNP Detail		 Chr4:117040419 Tssr42966 586 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224120072
MGI SNP Detail		 Chr4:117040431 Tssr42966 598 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252140163
MGI SNP Detail		 Chr4:117040605 Tssr42966 772 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6397820
MGI SNP Detail		 Chr4:117040717 Tssr42966 884 bp upstream
 SNP A/C A C
rs231493393
MGI SNP Detail		 Chr4:117040729 Tssr42966 896 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs251112962
MGI SNP Detail		 Chr4:117040730 Tssr42966 897 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs6398854
MGI SNP Detail		 Chr4:117040835 Tssr42966 1002 bp upstream
 SNP C/T T C
rs6398857
MGI SNP Detail		 Chr4:117040842 Tssr42966 1009 bp upstream
 SNP A/G A G G G G G A G G G G G G G G G G G G
rs248901782
MGI SNP Detail		 Chr4:117040857 Tssr42966 1024 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs583930561
MGI SNP Detail		 Chr4:117040942 Tssr42966 1109 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs6412198
MGI SNP Detail		 Chr4:117040959 Tssr42966 1126 bp upstream
 SNP C/G C G
rs6412326
MGI SNP Detail		 Chr4:117041028 Tssr42966 1195 bp upstream
 SNP A/G G A
rs48047142
MGI SNP Detail		 Chr4:117041106 Tssr42966 1273 bp upstream
 SNP G G G
rs223292356
MGI SNP Detail		 Chr4:117041121 Tssr42966 1288 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237884954
MGI SNP Detail		 Chr4:117041167 Tssr42966 1334 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T C T T T T T T T T T T T C T T T T T T T C T T T T
rs585247910
MGI SNP Detail		 Chr4:117041237 Tssr42966 1404 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32903385
MGI SNP Detail		 Chr4:117041360 Tssr42966 1527 bp upstream
 SNP C/T C C T C T
rs220747727
MGI SNP Detail		 Chr4:117041384 Tssr42966 1551 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs241502314
MGI SNP Detail		 Chr4:117041398 Tssr42966 1565 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258616832
MGI SNP Detail		 Chr4:117041407 Tssr42966 1574 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs220617561
MGI SNP Detail		 Chr4:117041409 Tssr42966 1576 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs240953055
MGI SNP Detail		 Chr4:117041422 Tssr42966 1589 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T C C T T T T T C T T T T T T C T T T T T T T C T T T T
rs265222119
MGI SNP Detail		 Chr4:117041523 Tssr42966 1690 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231198382
MGI SNP Detail		 Chr4:117041618 Tssr42966 1785 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs255641079
MGI SNP Detail		 Chr4:117041656 Tssr42966 1823 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs260160942
MGI SNP Detail		 Chr4:117041790 Tssr42966 1957 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
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Showing SNP(s) 1 - 75 of 75
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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12/10/2024
MGI 6.24 		The Jackson Laboratory