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Mouse SNP Summary
Symbol
Name
ID 		Tssr42995
transcription start site region 42995
MGI:5970762

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254089641
MGI SNP Detail		 Chr4:117726602 Ccdc24 within coordinates of
Tssr42995 1895 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226153211
MGI SNP Detail		 Chr4:117726639 Ccdc24 within coordinates of
Tssr42995 1858 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243928425
MGI SNP Detail		 Chr4:117726660 Ccdc24 within coordinates of
Tssr42995 1837 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs31962871
MGI SNP Detail		 Chr4:117726700 Ccdc24 within coordinates of
Tssr42995 1797 bp downstream
 SNP C/T C T T
rs239899322
MGI SNP Detail		 Chr4:117726720 Ccdc24 within coordinates of
Tssr42995 1777 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs28272946
MGI SNP Detail		 Chr4:117726733 Ccdc24 within coordinates of
Tssr42995 1764 bp downstream
 SNP C/T C C T C C C C C C T T T C C C
rs217899934
MGI SNP Detail		 Chr4:117726747 Ccdc24 within coordinates of
Tssr42995 1750 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G
rs28272945
MGI SNP Detail		 Chr4:117726763 Ccdc24 within coordinates of
Tssr42995 1734 bp downstream
 SNP A/G G G G G G G G G G G G G G A G
rs249373295
MGI SNP Detail		 Chr4:117726811 Ccdc24 within coordinates of
Tssr42995 1686 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs28272944
MGI SNP Detail		 Chr4:117727009 Ccdc24 within coordinates of
Tssr42995 1488 bp downstream
 SNP A/G A A A A A A G A A A A A A A A
rs231244403
MGI SNP Detail		 Chr4:117727029 Ccdc24 within coordinates of
Tssr42995 1468 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs263145568
MGI SNP Detail		 Chr4:117727054 Ccdc24 within coordinates of
Tssr42995 1443 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242183375
MGI SNP Detail		 Chr4:117727088 Ccdc24 within coordinates of
Tssr42995 1409 bp downstream
 SNP C/T C T
rs28272943
MGI SNP Detail		 Chr4:117727116 Ccdc24 within coordinates of
Tssr42995 1381 bp downstream
 SNP A/G G G G A A A G G G A G G G G G G
rs264609450
MGI SNP Detail		 Chr4:117727121 Ccdc24 within coordinates of
Tssr42995 1376 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222177675
MGI SNP Detail		 Chr4:117727191 Ccdc24 within coordinates of
Tssr42995 1306 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs28272942
MGI SNP Detail		 Chr4:117727230 Ccdc24 within coordinates of
Tssr42995 1267 bp downstream
 SNP G/T T T T T T T T T T T T T G T
rs254034658
MGI SNP Detail		 Chr4:117727255 Ccdc24 within coordinates of
Tssr42995 1242 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs226293027
MGI SNP Detail		 Chr4:117727295 Ccdc24 within coordinates of
Tssr42995 1202 bp downstream
 SNP C/G/T G G G G G G G G G G G G G G G G G G G G G C G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs250894616
MGI SNP Detail		 Chr4:117727310 Ccdc24 within coordinates of
Tssr42995 1187 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs28272941
MGI SNP Detail		 Chr4:117727331 Ccdc24 within coordinates of
Tssr42995 1166 bp downstream
 SNP A/G A G G A A A A G A G G A A A
rs231725395
MGI SNP Detail		 Chr4:117727355 Ccdc24 within coordinates of
Tssr42995 1142 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs260106013
MGI SNP Detail		 Chr4:117727378 Ccdc24 within coordinates of
Tssr42995 1119 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218042189
MGI SNP Detail		 Chr4:117727575 Ccdc24 within coordinates of
Tssr42995 922 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs28272940
MGI SNP Detail		 Chr4:117727587 Ccdc24 within coordinates of
Tssr42995 910 bp downstream
 SNP A/G G A A A A A A A A A A A A G A G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs28272939
MGI SNP Detail		 Chr4:117727705 Ccdc24 within coordinates of
Tssr42995 792 bp downstream
 SNP A/G G G G G G G G G G G G G G A G
rs214168572
MGI SNP Detail		 Chr4:117727809 Ccdc24 within coordinates of
Tssr42995 688 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs231365047
MGI SNP Detail		 Chr4:117727857 Ccdc24 within coordinates of
Tssr42995 640 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs259191042
MGI SNP Detail		 Chr4:117727929 Ccdc24 within coordinates of
Tssr42995 568 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs28272938
MGI SNP Detail		 Chr4:117727969 Ccdc24 within coordinates of
Tssr42995 528 bp downstream
 SNP A/C C C C C C C C C C C A C C C C
rs223707330
MGI SNP Detail		 Chr4:117728034 Ccdc24 within coordinates of
Tssr42995 463 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240019041
MGI SNP Detail		 Chr4:117728103 Ccdc24 within coordinates of
Tssr42995 394 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs264425759
MGI SNP Detail		 Chr4:117728153 Ccdc24 within coordinates of
Tssr42995 344 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs28272937
MGI SNP Detail		 Chr4:117728185 Ccdc24 within coordinates of
Tssr42995 312 bp downstream
 SNP A/G G G A G G G G G G A G A G G G
rs236965514
MGI SNP Detail		 Chr4:117728230 Ccdc24 within coordinates of
Tssr42995 267 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs254111916
MGI SNP Detail		 Chr4:117728336 Ccdc24 within coordinates of
Tssr42995 161 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs220280279
MGI SNP Detail		 Chr4:117728346 Ccdc24 within coordinates of
Tssr42995 151 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs245833050
MGI SNP Detail		 Chr4:117728477 Ccdc24 within coordinates of
Tssr42995 20 bp downstream
 SNP A/G A G
rs263724454
MGI SNP Detail		 Chr4:117728554 Ccdc24 within coordinates of
Tssr42995 40 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs232199881
MGI SNP Detail		 Chr4:117728611 Ccdc24 within coordinates of
Tssr42995 97 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28272936
MGI SNP Detail		 Chr4:117728612 Ccdc24 within coordinates of
Tssr42995 98 bp upstream
 SNP A/G A A G G G G G A G G G A G A A A A
rs260611387
MGI SNP Detail		 Chr4:117728635 Ccdc24 within coordinates of
Tssr42995 121 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs224987648
MGI SNP Detail		 Chr4:117728668 Ccdc24 within coordinates of
Tssr42995 154 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243507742
MGI SNP Detail		 Chr4:117728717 Ccdc24 within coordinates of
Tssr42995 203 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs214252050
MGI SNP Detail		 Chr4:117728718 Ccdc24 within coordinates of
Tssr42995 204 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs28272935
MGI SNP Detail		 Chr4:117728823 Ccdc24 within coordinates of
Tssr42995 309 bp upstream
 SNP A/G A A G G G G A G G G A G A G A A
rs257944053
MGI SNP Detail		 Chr4:117728832 Ccdc24 within coordinates of
Tssr42995 318 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28272934
MGI SNP Detail		 Chr4:117728925 Ccdc24 within coordinates of
Tssr42995 411 bp upstream
 SNP C/T C C C C C C C C C C T C C T C
rs242665875
MGI SNP Detail		 Chr4:117728953 Ccdc24 within coordinates of
Tssr42995 439 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs259981477
MGI SNP Detail		 Chr4:117728996 Ccdc24 within coordinates of
Tssr42995 482 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212571044
MGI SNP Detail		 Chr4:117729054 Ccdc24 within coordinates of
Tssr42995 540 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs28272933
MGI SNP Detail		 Chr4:117729105 Ccdc24 within coordinates of
Tssr42995 591 bp upstream
 SNP A/C A A C C C A C C C C C A C A A
rs248549324
MGI SNP Detail		 Chr4:117729136 Ccdc24 within coordinates of
Tssr42995 622 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220243926
MGI SNP Detail		 Chr4:117729209 Ccdc24 within coordinates of
Tssr42995 695 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243526182
MGI SNP Detail		 Chr4:117729233 Ccdc24 within coordinates of
Tssr42995 719 bp upstream
Tssr42997 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263440631
MGI SNP Detail		 Chr4:117729280 Ccdc24 within coordinates of
Tssr42995 766 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224410844
MGI SNP Detail		 Chr4:117729289 Ccdc24 within coordinates of
Tssr42995 775 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251397246
MGI SNP Detail		 Chr4:117729340 Ccdc24 within coordinates of
Tssr42995 826 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs260660499
MGI SNP Detail		 Chr4:117729392 Ccdc24 within coordinates of
Tssr42995 878 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs225070423
MGI SNP Detail		 Chr4:117729393 Ccdc24 within coordinates of
Tssr42995 879 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237138192
MGI SNP Detail		 Chr4:117729422 Ccdc24 within coordinates of
Tssr42995 908 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258343567
MGI SNP Detail		 Chr4:117729423 Ccdc24 within coordinates of
Tssr42995 909 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs28272932
MGI SNP Detail		 Chr4:117729552 Ccdc24 within coordinates of
Tssr42995 1038 bp upstream
 SNP C/T C C C C C C C C C C C C C T C
rs253088767
MGI SNP Detail		 Chr4:117729667 Ccdc24 within coordinates of
Tssr42995 1153 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs28272931
MGI SNP Detail		 Chr4:117729736 Ccdc24 within coordinates of
Tssr42995 1222 bp upstream
 SNP C/T C T T T T T T T T T T T T C T C C
rs233616611
MGI SNP Detail		 Chr4:117729738 Ccdc24 within coordinates of
Tssr42995 1224 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246502754
MGI SNP Detail		 Chr4:117729761 Ccdc24 within coordinates of
Tssr42995 1247 bp upstream
Tssr42999 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs28272930
MGI SNP Detail		 Chr4:117729791 Ccdc24 within coordinates of
Tssr42995 1277 bp upstream
 SNP C/G C C C C C C C C C C C C C G C
rs229665540
MGI SNP Detail		 Chr4:117729929 Tssr42995 1415 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T C C T T T T T T T T T T T C T T T T T T T T T T T T
rs52046154
MGI SNP Detail		 Chr4:117730072 Tssr42995 1558 bp upstream
 SNP A/G A G
rs214803498
MGI SNP Detail		 Chr4:117730105 Tssr42995 1591 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs28272929
MGI SNP Detail		 Chr4:117730146 Tssr42995 1632 bp upstream
 SNP C/T C C T T T T T C T T T C T T C T C C
rs28272928
MGI SNP Detail		 Chr4:117730204 Tssr42995 1690 bp upstream
 SNP A/G G G A A A A G A A G A A G A G G
rs224546044
MGI SNP Detail		 Chr4:117730210 Tssr42995 1696 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248492958
MGI SNP Detail		 Chr4:117730294 B4galt2 within coordinates of
Tssr42995 1780 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 75 of 75
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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MGI 6.24 		The Jackson Laboratory