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Mouse SNP Summary
Symbol
Name
ID 		Tssr43290
transcription start site region 43290
MGI:5971057

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Showing SNP(s) 1 - 53 of 53

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214349412
MGI SNP Detail		 Chr4:123557311 Macf1 within coordinates of
Rr377112 within coordinates of
Rr99952 within coordinates of
Tssr43290 1983 bp downstream
 SNP C/T C C C C C C C C T T C C C C C C C C C T C C C C C T T C C T C C C C T C C C C C C C C C C C C C C T T T T
rs239594211
MGI SNP Detail		 Chr4:123557363 Macf1 within coordinates of
Rr377112 within coordinates of
Rr99952 within coordinates of
Tssr43290 1931 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs259143696
MGI SNP Detail		 Chr4:123557515 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr377112 within coordinates of
Rr99952 within coordinates of
Tssr43290 1779 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G A G G G G G G G G
rs222457650
MGI SNP Detail		 Chr4:123557534 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr377112 within coordinates of
Rr99952 within coordinates of
Tssr43290 1760 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236194172
MGI SNP Detail		 Chr4:123557702 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr377112 within coordinates of
Rr99952 within coordinates of
Tssr43290 1592 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249480144
MGI SNP Detail		 Chr4:123557722 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr377112 within coordinates of
Rr99952 within coordinates of
Tssr43290 1572 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218779826
MGI SNP Detail		 Chr4:123557810 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr377112 within coordinates of
Rr99952 within coordinates of
Tssr43290 1484 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A G G A A G A A A A G A A A A A A A A A A A G A A A G A A A G A A A G
rs243071376
MGI SNP Detail		 Chr4:123558066 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 1228 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs265285911
MGI SNP Detail		 Chr4:123558077 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 1217 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G C G G G G G G G G G G G G
rs223452837
MGI SNP Detail		 Chr4:123558215 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 1079 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs247914304
MGI SNP Detail		 Chr4:123558244 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 1050 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs263628524
MGI SNP Detail		 Chr4:123558435 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 859 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T T T T C T T T C T T T C T T T T
rs228652571
MGI SNP Detail		 Chr4:123558487 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 807 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A A G A A A A G A A A A A G A A A G A A A G A A A
rs241757956
MGI SNP Detail		 Chr4:123558489 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 805 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A C A A A A C A A A A A C A A A C A A A C A A A
rs254136393
MGI SNP Detail		 Chr4:123558707 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 587 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C
rs224720088
MGI SNP Detail		 Chr4:123558732 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 562 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
rs251046099
MGI SNP Detail		 Chr4:123558802 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 492 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs215645668
MGI SNP Detail		 Chr4:123558863 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 431 bp downstream
 SNP G/T T T T T T T G G T T T T G T T T G T G G G T T G T T T T G T T G T T T T G G G
rs231320436
MGI SNP Detail		 Chr4:123558878 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 416 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C G C C C G C C C
rs257838178
MGI SNP Detail		 Chr4:123558881 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 413 bp downstream
 SNP C/T C C C C C C C T T C C C C C C C C C C C T T C C C C T C C C C C C C C C C C C T T T
rs216424113
MGI SNP Detail		 Chr4:123558909 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 385 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G C G G G C G G G G G G G
rs236131233
MGI SNP Detail		 Chr4:123558911 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 383 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C
rs249411492
MGI SNP Detail		 Chr4:123558931 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 363 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C T C C C C C C C C C C C T C C C T C C C C C C C C
rs212717541
MGI SNP Detail		 Chr4:123558951 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 343 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C A C C C C C C C C C C A C C C A C C C C C C C C
rs237908428
MGI SNP Detail		 Chr4:123558954 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 340 bp downstream
 SNP C/G G G G G G G C C G G G G G G C G G G C G C C C G G G G C C G G G G C G G G C G G G C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs257800851
MGI SNP Detail		 Chr4:123558957 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 337 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224158772
MGI SNP Detail		 Chr4:123558971 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 323 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246446947
MGI SNP Detail		 Chr4:123559052 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 242 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31850115
MGI SNP Detail		 Chr4:123559154 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 140 bp downstream
 SNP A/C C A
rs32708309
MGI SNP Detail		 Chr4:123559170 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 124 bp downstream
 SNP A/T T A
rs251990145
MGI SNP Detail		 Chr4:123559176 Cpgi14755 within coordinates of
Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 118 bp downstream
 SNP A/G A A A A A A A A G G A A A A A A A A G A A A G A A G G G A G A A A G G A A A A A G A A A G A A A G G G G G
rs222039189
MGI SNP Detail		 Chr4:123559362 Macf1 within coordinates of
Rr99952 within coordinates of
Tssr43290 56 bp upstream
 SNP A/G G G G G G G G G G A G G G G G G G G G G G G G G G A G G G G G G G G A G G G G G G G G G G G G G G G A G G
rs241697813
MGI SNP Detail		 Chr4:123559707 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Rr99952 within coordinates of
Tssr43290 401 bp upstream
 SNP G/T G G G G G G G G T T G G G G G G G G G G G G G G G T T G G T G G G G T G G G G G G G G G G G G G G T T T T
rs254072248
MGI SNP Detail		 Chr4:123559754 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Rr99952 within coordinates of
Tssr43290 448 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C A C C C A C C C C A C C C C C A C C C C C C A C C C A C C C C C C C C
rs224650330
MGI SNP Detail		 Chr4:123559960 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Rr99952 within coordinates of
Tssr43290 654 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C C C C C C A C C C A C C C C C C C C
rs246290874
MGI SNP Detail		 Chr4:123560069 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 763 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A G A A A G A A A A G A A A A A G A A A A A A G A A A G A A A G A A A A
rs262933140
MGI SNP Detail		 Chr4:123560165 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 859 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs51080915
MGI SNP Detail		 Chr4:123560187 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 881 bp upstream
 SNP A A A
rs253543464
MGI SNP Detail		 Chr4:123560246 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 940 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G A G G G G A G G G G G A G G G G G G A G G G A G G G A G G G G
rs228959061
MGI SNP Detail		 Chr4:123560281 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 975 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs585251266
MGI SNP Detail		 Chr4:123560536 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Rr84970 within coordinates of
Tssr43290 1230 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243269541
MGI SNP Detail		 Chr4:123560648 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Rr84970 within coordinates of
Tssr43290 1342 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs212658826
MGI SNP Detail		 Chr4:123560746 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Rr84970 within coordinates of
Tssr43290 1440 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T C T T T C T T T T C T T T T T C T T T T T T C T T T C T T T C T T T T
rs236006678
MGI SNP Detail		 Chr4:123560786 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Rr84970 within coordinates of
Tssr43290 1480 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G A G G G A G G G G
rs262380949
MGI SNP Detail		 Chr4:123560876 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 1570 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215588398
MGI SNP Detail		 Chr4:123560891 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 1585 bp upstream
 SNP A/G A A A A A A A A G G A A A A A A A A G G A A G A A G G G A G A A A G G A A A A A G A A A G A A A G G G G G
rs240990718
MGI SNP Detail		 Chr4:123560899 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 1593 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G C G G G C G G G G C G G G G G C G G G G G G C G G G C G G G G G G G G
rs252623740
MGI SNP Detail		 Chr4:123560947 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 1641 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs221985626
MGI SNP Detail		 Chr4:123561029 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 1723 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs241635015
MGI SNP Detail		 Chr4:123561069 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 1763 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248288308
MGI SNP Detail		 Chr4:123561134 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 1828 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs221282462
MGI SNP Detail		 Chr4:123561146 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Tssr43290 1840 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs243396947
MGI SNP Detail		 Chr4:123561243 Gm12925 within coordinates of
Macf1 within coordinates of
Rr377113 within coordinates of
Rr84971 within coordinates of
Tssr43290 1937 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T A T T T A T T T T A T T T T T A T T T T T T A T T T A T T T A T T T T
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Showing SNP(s) 1 - 53 of 53
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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