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Mouse SNP Summary
Symbol
Name
ID
Tssr43800
transcription start site region 43800
MGI:5971567

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Showing SNP(s) 1 - 64 of 64

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244962986
MGI SNP Detail
Alliance Variant
Chr4:133448325 Arid1a Intron
Tssr43800 1882 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578496807
MGI SNP Detail
Alliance Variant
Chr4:133448468 Arid1a Intron
Tssr43800 1739 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs3687840
MGI SNP Detail
Alliance Variant
Chr4:133448518 Arid1a Intron
Tssr43800 1689 bp downstream
SNP A/C A A A A C C A C C C C C C C A C
rs228890635
MGI SNP Detail
Alliance Variant
Chr4:133448566 Arid1a Intron
Tssr43800 1641 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246402354
MGI SNP Detail
Alliance Variant
Chr4:133448768 Arid1a Intron
Tssr43800 1439 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215653936
MGI SNP Detail
Alliance Variant
Chr4:133448838 Arid1a Intron
Tssr43800 1369 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs231838088
MGI SNP Detail
Alliance Variant
Chr4:133448901 Arid1a Intron
Tssr43800 1306 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251318161
MGI SNP Detail
Alliance Variant
Chr4:133448942 Arid1a Intron
Tssr43800 1265 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215460783
MGI SNP Detail
Alliance Variant
Chr4:133448972 Arid1a Intron
Tssr43800 1235 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs581738287
MGI SNP Detail
Alliance Variant
Chr4:133449021 Arid1a Intron
Tssr43800 1186 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32772912
MGI SNP Detail
Alliance Variant
Chr4:133449071 Arid1a Intron
Tssr43800 1136 bp downstream
SNP A/G G G G G A G A
rs250781777
MGI SNP Detail
Alliance Variant
Chr4:133449077 Arid1a Intron
Tssr43800 1130 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs31999868
MGI SNP Detail
Chr4:133449127 Arid1a within coordinates of
Tssr43800 1080 bp downstream
SNP A/G G G A A
rs212441998
MGI SNP Detail
Alliance Variant
Chr4:133449197 Arid1a Intron
Tssr43800 1010 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32298910
MGI SNP Detail
Alliance Variant
Chr4:133449205 Arid1a Intron
Tssr43800 1002 bp downstream
SNP A/G A A G A A A
rs254472684
MGI SNP Detail
Alliance Variant
Chr4:133449246 Arid1a Intron
Tssr43800 961 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs221984277
MGI SNP Detail
Alliance Variant
Chr4:133449346 Arid1a Intron
Tssr43800 861 bp downstream
SNP A/G A G
rs221978660
MGI SNP Detail
Alliance Variant
Chr4:133449400 Arid1a Intron
Tssr43800 807 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27542796
MGI SNP Detail
Alliance Variant
Chr4:133449416 Arid1a Intron
Tssr43800 791 bp downstream
SNP A/C A A A A A A A C C A A C A C A A A A
rs258052382
MGI SNP Detail
Alliance Variant
Chr4:133449423 Arid1a Intron
Tssr43800 784 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs580292563
MGI SNP Detail
Alliance Variant
Chr4:133449553 Arid1a Intron
Tssr43800 654 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs221909116
MGI SNP Detail
Alliance Variant
Chr4:133449562 Arid1a Intron
Tssr43800 645 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs242046193
MGI SNP Detail
Alliance Variant
Chr4:133449654 Arid1a Intron
Tssr43800 553 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253828420
MGI SNP Detail
Alliance Variant
Chr4:133449723 Arid1a Intron
Tssr43800 484 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs229205297
MGI SNP Detail
Alliance Variant
Chr4:133449811 Arid1a Intron
Tssr43800 396 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs582498861
MGI SNP Detail
Alliance Variant
Chr4:133449823 Arid1a Intron
Tssr43800 384 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs49589648
MGI SNP Detail
Alliance Variant
Chr4:133449826 Arid1a Intron
Tssr43800 381 bp downstream
SNP C C C
rs240844962
MGI SNP Detail
Alliance Variant
Chr4:133450017 Arid1a Intron
Tssr43800 190 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs257725138
MGI SNP Detail
Alliance Variant
Chr4:133450040 Arid1a Intron
Tssr43800 167 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs231378969
MGI SNP Detail
Alliance Variant
Chr4:133450062 Arid1a Intron
Tssr43800 145 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27542795
MGI SNP Detail
Alliance Variant
Chr4:133450068 Arid1a Intron
Tssr43800 139 bp downstream
SNP G/T G G G G G G T G G G G G G G G
rs213491935
MGI SNP Detail
Alliance Variant
Chr4:133450189 Arid1a Coding-Synonymous
Tssr43800 18 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27542794
MGI SNP Detail
Alliance Variant
Chr4:133450444 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 224 bp upstream
SNP C/T C C C C C C C C C T C T C C C C
rs108670366
MGI SNP Detail
Alliance Variant
Chr4:133450474 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 254 bp upstream
Tssr43802 within coordinates of
SNP T T
rs27542793
MGI SNP Detail
Alliance Variant
Chr4:133450604 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 384 bp upstream
SNP G/T T T G G T G G G G G G G T G
rs32800449
MGI SNP Detail
Alliance Variant
Chr4:133450697 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 477 bp upstream
SNP A/T T A T
rs236748541
MGI SNP Detail
Alliance Variant
Chr4:133450719 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 499 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs254851511
MGI SNP Detail
Alliance Variant
Chr4:133450863 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 643 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27542792
MGI SNP Detail
Alliance Variant
Chr4:133450895 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 675 bp upstream
SNP A/G A A A A A A G A A A A A A A
rs237970789
MGI SNP Detail
Alliance Variant
Chr4:133450898 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 678 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs262518848
MGI SNP Detail
Alliance Variant
Chr4:133451010 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 790 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222736970
MGI SNP Detail
Alliance Variant
Chr4:133451014 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 794 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs236913303
MGI SNP Detail
Alliance Variant
Chr4:133451082 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 862 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs248054281
MGI SNP Detail
Alliance Variant
Chr4:133451137 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 917 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs222581473
MGI SNP Detail
Alliance Variant
Chr4:133451148 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 928 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs240783498
MGI SNP Detail
Alliance Variant
Chr4:133451162 Arid1a Intron
Arid1a mRNA-UTR
Tssr43800 942 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs258090215
MGI SNP Detail
Alliance Variant
Chr4:133451365 Arid1a Intron
Tssr43800 1145 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228431272
MGI SNP Detail
Alliance Variant
Chr4:133451494 Arid1a Intron
Tssr43800 1274 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs243342456
MGI SNP Detail
Alliance Variant
Chr4:133451497 Arid1a Intron
Tssr43800 1277 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs32733540
MGI SNP Detail
Alliance Variant
Chr4:133451559 Arid1a Intron
Tssr43800 1339 bp upstream
SNP A/T T A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs52426957
MGI SNP Detail
Alliance Variant
Chr4:133451564 Arid1a Intron
Tssr43800 1344 bp upstream
SNP C/G C C G
rs52472553
MGI SNP Detail
Alliance Variant
Chr4:133451566 Arid1a Intron
Tssr43800 1346 bp upstream
SNP C/G G C C G
rs256258783
MGI SNP Detail
Alliance Variant
Chr4:133451586 Arid1a Intron
Tssr43800 1366 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs585963667
MGI SNP Detail
Alliance Variant
Chr4:133451590 Arid1a Intron
Tssr43800 1370 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580193170
MGI SNP Detail
Alliance Variant
Chr4:133451700 Arid1a Intron
Tssr43800 1480 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32450561
MGI SNP Detail
Alliance Variant
Chr4:133451713 Arid1a Intron
Tssr43800 1493 bp upstream
SNP A/C C C A A A
rs248340263
MGI SNP Detail
Alliance Variant
Chr4:133451774 Arid1a Intron
Tssr43800 1554 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52305170
MGI SNP Detail
Alliance Variant
Chr4:133451793 Arid1a Intron
Tssr43800 1573 bp upstream
SNP A/C C C A
rs32847014
MGI SNP Detail
Alliance Variant
Chr4:133451833 Arid1a Intron
Tssr43800 1613 bp upstream
SNP A/T A A T
rs27542791
MGI SNP Detail
Alliance Variant
Chr4:133451931 Arid1a Intron
Tssr43800 1711 bp upstream
SNP C/G C C C C G G C C G G C C G C G G
rs27542790
MGI SNP Detail
Alliance Variant
Chr4:133451935 Arid1a Intron
Tssr43800 1715 bp upstream
SNP A/G G G G G G A G G G G G G G
rs583567286
MGI SNP Detail
Alliance Variant
Chr4:133451975 Arid1a Intron
Tssr43800 1755 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs27542789
MGI SNP Detail
Alliance Variant
Chr4:133451979 Arid1a Intron
Tssr43800 1759 bp upstream
SNP C/G C C C C C C C C G C G C C C C C
rs27542788
MGI SNP Detail
Alliance Variant
Chr4:133452134 Arid1a Intron
Tssr43800 1914 bp upstream
SNP A/C C A C C C A C C A A C C C
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Showing SNP(s) 1 - 64 of 64

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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory