About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr43872
transcription start site region 43872
MGI:5971639

<< first < prev1 next > last >>
Showing SNP(s) 1 - 66 of 66

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222815129
MGI SNP Detail
Chr4:133853359 Tssr43872 1981 bp downstream
Ubxn11 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs580421716
MGI SNP Detail
Chr4:133853422 Tssr43872 1918 bp downstream
Ubxn11 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27544027
MGI SNP Detail
Chr4:133853487 Tssr43872 1853 bp downstream
Ubxn11 within coordinates of
SNP A/G G G G G A G A G G G G
rs32720511
MGI SNP Detail
Chr4:133853503 Tssr43872 1837 bp downstream
Ubxn11 within coordinates of
SNP A/G A A G A G
rs27544026
MGI SNP Detail
Chr4:133853654 Tssr43872 1686 bp downstream
Ubxn11 within coordinates of
SNP A/G G G G G G G G G G G A G G A G
rs220916899
MGI SNP Detail
Chr4:133853679 Tssr43872 1661 bp downstream
Ubxn11 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243935477
MGI SNP Detail
Chr4:133853759 Tssr43872 1581 bp downstream
Ubxn11 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs265042549
MGI SNP Detail
Chr4:133853842 Tssr43872 1498 bp downstream
Ubxn11 within coordinates of
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs228702937
MGI SNP Detail
Chr4:133853892 Tssr43872 1448 bp downstream
Ubxn11 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs244018873
MGI SNP Detail
Chr4:133854017 Tssr43872 1323 bp downstream
Ubxn11 within coordinates of
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs261012165
MGI SNP Detail
Chr4:133854021 Tssr43872 1319 bp downstream
Ubxn11 within coordinates of
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs228388865
MGI SNP Detail
Chr4:133854035 Tssr43872 1305 bp downstream
Ubxn11 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246970567
MGI SNP Detail
Chr4:133854043 Tssr43872 1297 bp downstream
Ubxn11 within coordinates of
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs214916081
MGI SNP Detail
Chr4:133854063 Tssr43872 1277 bp downstream
Ubxn11 within coordinates of
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230934407
MGI SNP Detail
Chr4:133854074 Tssr43872 1266 bp downstream
Ubxn11 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27544025
MGI SNP Detail
Chr4:133854095 Tssr43872 1245 bp downstream
Ubxn11 within coordinates of
SNP C/T C C C C C C T T C C T C T C C T C C
rs214566131
MGI SNP Detail
Chr4:133854164 Tssr43872 1176 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235766491
MGI SNP Detail
Chr4:133854187 Tssr43872 1153 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27544024
MGI SNP Detail
Chr4:133854223 Tssr43872 1117 bp downstream
SNP C/T C C C C C C C C C C T C C C C
rs248564848
MGI SNP Detail
Chr4:133854231 Tssr43872 1109 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31953581
MGI SNP Detail
Chr4:133854262 Tssr43872 1078 bp downstream
SNP C/T T T C T T T
rs234337780
MGI SNP Detail
Chr4:133854300 Tssr43872 1040 bp downstream
SNP G/T T T T G G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G G G G G G G G G G G G G G G G G
rs32420383
MGI SNP Detail
Chr4:133854309 Tssr43872 1031 bp downstream
SNP C/T T T C C T C
rs224344497
MGI SNP Detail
Chr4:133854415 Tssr43872 925 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247117469
MGI SNP Detail
Chr4:133854432 Tssr43872 908 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256939414
MGI SNP Detail
Chr4:133854434 Tssr43872 906 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs220975565
MGI SNP Detail
Chr4:133854548 Tssr43872 792 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs582460556
MGI SNP Detail
Chr4:133854574 Tssr43872 766 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32283936
MGI SNP Detail
Chr4:133854630 Tssr43872 710 bp downstream
SNP C/T C C C T C T
rs261220550
MGI SNP Detail
Chr4:133854697 Tssr43872 643 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228533825
MGI SNP Detail
Chr4:133854766 Sh3bgrl3 within coordinates of
Tssr43872 574 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs240961794
MGI SNP Detail
Chr4:133854826 Sh3bgrl3 within coordinates of
Tssr43872 514 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258801033
MGI SNP Detail
Chr4:133854863 Sh3bgrl3 within coordinates of
Tssr39535 within coordinates of
Tssr43872 477 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs13461695
MGI SNP Detail
Chr4:133854871 Sh3bgrl3 within coordinates of
Tssr39535 within coordinates of
Tssr43872 469 bp downstream
SNP A/G G G A G A
rs254997048
MGI SNP Detail
Chr4:133854876 Sh3bgrl3 within coordinates of
Tssr39535 within coordinates of
Tssr43872 464 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214128485
MGI SNP Detail
Chr4:133854877 Sh3bgrl3 within coordinates of
Tssr39535 within coordinates of
Tssr43872 463 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27544023
MGI SNP Detail
Chr4:133854974 Sh3bgrl3 within coordinates of
Tssr39536 within coordinates of
Tssr43866 within coordinates of
Tssr43872 366 bp downstream
SNP C/T T T T T T T C T T T C T T T T
rs242579257
MGI SNP Detail
Chr4:133855038 Sh3bgrl3 within coordinates of
Tssr43868 within coordinates of
Tssr43872 302 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs217563216
MGI SNP Detail
Chr4:133855553 Sh3bgrl3 within coordinates of
Tssr43872 192 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27544022
MGI SNP Detail
Chr4:133855563 Cpgi15028 within coordinates of
Sh3bgrl3 within coordinates of
Tssr43872 202 bp upstream
SNP A/G G G G G G G A G G G G G G G G
rs246038852
MGI SNP Detail
Chr4:133855613 Cpgi15028 within coordinates of
Sh3bgrl3 within coordinates of
Tssr43872 252 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs27544021
MGI SNP Detail
Chr4:133855614 Cpgi15028 within coordinates of
Sh3bgrl3 within coordinates of
Tssr43872 253 bp upstream
SNP G/T G G G G T G G G G G G G G
rs216292791
MGI SNP Detail
Chr4:133855729 Cpgi15028 within coordinates of
Sh3bgrl3 within coordinates of
Tssr43872 368 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs45847349
MGI SNP Detail
Chr4:133855786 Cpgi15028 within coordinates of
Sh3bgrl3 within coordinates of
Tssr43872 425 bp upstream
SNP A/G G G A G A
rs27544020
MGI SNP Detail
Chr4:133856103 Cpgi15028 within coordinates of
Rr601575 within coordinates of
Tssr43872 742 bp upstream
SNP C/G G G G G C C G G C C G G G C G G C G
rs221832278
MGI SNP Detail
Chr4:133856214 Cpgi15028 within coordinates of
Rr601575 within coordinates of
Tssr43872 853 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T
rs229780178
MGI SNP Detail
Chr4:133856284 Cpgi15028 within coordinates of
Gm68742 within coordinates of
Rr601575 within coordinates of
Tssr43872 923 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27544019
MGI SNP Detail
Chr4:133856286 Cpgi15028 within coordinates of
Gm68742 within coordinates of
Rr601575 within coordinates of
Tssr43872 925 bp upstream
SNP C/T C C C C C C T C C C C T C C
rs27544018
MGI SNP Detail
Chr4:133856355 Cpgi15028 within coordinates of
Gm68742 within coordinates of
Rr601575 within coordinates of
Tssr43872 994 bp upstream
SNP A/C C C C C C A C C C C C C C C
rs263003045
MGI SNP Detail
Chr4:133856462 Gm68742 within coordinates of
Rr601575 within coordinates of
Tssr43872 1101 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222808561
MGI SNP Detail
Chr4:133856568 Gm68742 within coordinates of
Rr601575 within coordinates of
Tssr43872 1207 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs242754748
MGI SNP Detail
Chr4:133856663 Gm68742 within coordinates of
Tssr43872 1302 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs579820138
MGI SNP Detail
Chr4:133856752 Gm68742 within coordinates of
Tssr43872 1391 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs264790025
MGI SNP Detail
Chr4:133856763 Gm68742 within coordinates of
Tssr43872 1402 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs27544017
MGI SNP Detail
Chr4:133856801 Gm68742 within coordinates of
Tssr43872 1440 bp upstream
SNP A/C A A A A A A A C A A C A C A A C A A
rs242541022
MGI SNP Detail
Chr4:133856833 Gm68742 within coordinates of
Tssr43872 1472 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs49384117
MGI SNP Detail
Chr4:133856855 Gm68742 within coordinates of
Tssr43872 1494 bp upstream
SNP C/T T T C T C
rs228822100
MGI SNP Detail
Chr4:133856861 Gm68742 within coordinates of
Tssr43872 1500 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs31877108
MGI SNP Detail
Chr4:133856956 Rr601576 within coordinates of
Tssr43872 1595 bp upstream
SNP A/T T T A T T T
rs583381298
MGI SNP Detail
Chr4:133856980 Rr601576 within coordinates of
Tssr43872 1619 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs215811601
MGI SNP Detail
Chr4:133857048 Rr601576 within coordinates of
Tssr43872 1687 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs239028089
MGI SNP Detail
Chr4:133857099 Rr601576 within coordinates of
Tssr43872 1738 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27544016
MGI SNP Detail
Chr4:133857157 Rr601576 within coordinates of
Rr601578 within coordinates of
Tssr43872 1796 bp upstream
SNP A/G G G G G G G G A G G A G G G G A G G
rs213433015
MGI SNP Detail
Chr4:133857165 Rr601576 within coordinates of
Tssr43872 1804 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs230054117
MGI SNP Detail
Chr4:133857167 Rr601576 within coordinates of
Tssr43872 1806 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs32671639
MGI SNP Detail
Chr4:133857233 Cep85 within coordinates of
Tssr43872 1872 bp upstream
SNP G/T T T G T T T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 66 of 66

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory