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Mouse SNP Summary
Symbol
Name
ID 		Tssr43897
transcription start site region 43897
MGI:5971664

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs50145574
MGI SNP Detail		 Chr4:134097912 Extl1 within coordinates of
Tssr43897 1974 bp downstream
 SNP A A A A
rs52003544
MGI SNP Detail		 Chr4:134097918 Extl1 within coordinates of
Tssr43897 1968 bp downstream
 SNP C C C C
rs27563212
MGI SNP Detail		 Chr4:134097921 Extl1 within coordinates of
Tssr43897 1965 bp downstream
 SNP C/T T T T C C
rs46753920
MGI SNP Detail		 Chr4:134097925 Extl1 within coordinates of
Tssr43897 1961 bp downstream
 SNP A A A A
rs27563211
MGI SNP Detail		 Chr4:134098072 Extl1 within coordinates of
Tssr43897 1814 bp downstream
 SNP G/T G G G G G G G G G G T G G G G
rs50348012
MGI SNP Detail		 Chr4:134098136 Extl1 within coordinates of
Tssr43897 1750 bp downstream
 SNP A A A
rs222461960
MGI SNP Detail		 Chr4:134098180 Extl1 within coordinates of
Tssr43897 1706 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27563210
MGI SNP Detail		 Chr4:134098191 Extl1 within coordinates of
Tssr43897 1695 bp downstream
 SNP C/G C G C C G C C
rs241101953
MGI SNP Detail		 Chr4:134098254 Extl1 within coordinates of
Tssr43897 1632 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs252577657
MGI SNP Detail		 Chr4:134098400 Cpgi15037 within coordinates of
Extl1 within coordinates of
Tssr43897 1486 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27563209
MGI SNP Detail		 Chr4:134098406 Cpgi15037 within coordinates of
Extl1 within coordinates of
Tssr43897 1480 bp downstream
 SNP C/T T T T T T T T C C T T C T T T T T T T
rs27563208
MGI SNP Detail		 Chr4:134098445 Cpgi15037 within coordinates of
Extl1 within coordinates of
Tssr43897 1441 bp downstream
 SNP G/T G G G G G G G G T G G G G
rs27563207
MGI SNP Detail		 Chr4:134098462 Cpgi15037 within coordinates of
Extl1 within coordinates of
Tssr43897 1424 bp downstream
 SNP A/T T T T T T T T A T T T A T T T T T T T
rs265171673
MGI SNP Detail		 Chr4:134098616 Cpgi15037 within coordinates of
Extl1 within coordinates of
Tssr43897 1270 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27563206
MGI SNP Detail		 Chr4:134098675 Cpgi15037 within coordinates of
Extl1 within coordinates of
Tssr43897 1211 bp downstream
 SNP G/T G G G G G G T G G G G G G G G
rs244132909
MGI SNP Detail		 Chr4:134098821 Cpgi15037 within coordinates of
Extl1 within coordinates of
Tssr43897 1065 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259978934
MGI SNP Detail		 Chr4:134098846 Cpgi15037 within coordinates of
Extl1 within coordinates of
Tssr43897 1040 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228490602
MGI SNP Detail		 Chr4:134098852 Extl1 within coordinates of
Tssr43897 1034 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs27563205
MGI SNP Detail		 Chr4:134098935 Extl1 within coordinates of
Tssr43895 within coordinates of
Tssr43897 951 bp downstream
 SNP A/G G G G G G G G A A G G A G G G G G G G
rs215348514
MGI SNP Detail		 Chr4:134098989 Extl1 within coordinates of
Tssr43897 897 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs231042640
MGI SNP Detail		 Chr4:134099049 Extl1 within coordinates of
Tssr43897 837 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250539090
MGI SNP Detail		 Chr4:134099062 Extl1 within coordinates of
Tssr43897 824 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs27563204
MGI SNP Detail		 Chr4:134099257 Extl1 within coordinates of
Tssr43897 629 bp downstream
 SNP C/G C C C C C G C C C C C C C
rs234619817
MGI SNP Detail		 Chr4:134099350 Extl1 within coordinates of
Tssr43897 536 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs255228771
MGI SNP Detail		 Chr4:134099353 Extl1 within coordinates of
Tssr43897 533 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216410708
MGI SNP Detail		 Chr4:134099505 Extl1 within coordinates of
Tssr43897 381 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs27563203
MGI SNP Detail		 Chr4:134099508 Extl1 within coordinates of
Tssr43897 378 bp downstream
 SNP G/T G G G G G G T G G G T G G G G G G G
rs27563202
MGI SNP Detail		 Chr4:134099540 Extl1 within coordinates of
Tssr43897 346 bp downstream
 SNP C/T C C C C C C C T T C C T C T C C C C C
rs220020257
MGI SNP Detail		 Chr4:134099747 Extl1 within coordinates of
Tssr43897 139 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247214322
MGI SNP Detail		 Chr4:134099749 Extl1 within coordinates of
Tssr43897 137 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs27563201
MGI SNP Detail		 Chr4:134099830 Extl1 within coordinates of
Tssr43897 56 bp downstream
 SNP C/T C C C C C C T C C C C C C C C
rs221398975
MGI SNP Detail		 Chr4:134099856 Extl1 within coordinates of
Tssr43896 within coordinates of
Tssr43897 30 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27563200
MGI SNP Detail		 Chr4:134099859 Extl1 within coordinates of
Tssr43896 within coordinates of
Tssr43897 27 bp downstream
 SNP A/T T T T T T T T A T T T A A T T T T T T
rs31834313
MGI SNP Detail		 Chr4:134099902 Tssr43897 2 bp upstream
 SNP A/G G G A G G G
rs228582700
MGI SNP Detail		 Chr4:134099929 Tssr43897 29 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32886270
MGI SNP Detail		 Chr4:134100024 Tssr43897 124 bp upstream
 SNP G/T T T G T T T
rs32141785
MGI SNP Detail		 Chr4:134100145 Tssr43897 245 bp upstream
 SNP A/G A A G A A A
rs261898188
MGI SNP Detail		 Chr4:134100178 Tssr43897 278 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227964666
MGI SNP Detail		 Chr4:134100217 Tssr43897 317 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248831278
MGI SNP Detail		 Chr4:134100293 Tssr43897 393 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216659630
MGI SNP Detail		 Chr4:134100373 Tssr43897 473 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234451880
MGI SNP Detail		 Chr4:134100403 Tssr43897 503 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32588972
MGI SNP Detail		 Chr4:134100434 Tssr43897 534 bp upstream
 SNP A/G G G A G G G
rs214891150
MGI SNP Detail		 Chr4:134100469 Tssr43897 569 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235997004
MGI SNP Detail		 Chr4:134100504 Tssr43897 604 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs31955275
MGI SNP Detail		 Chr4:134100517 Tssr43897 617 bp upstream
 SNP G/T G G T G G G
rs222046513
MGI SNP Detail		 Chr4:134100519 Tssr43897 619 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs230234260
MGI SNP Detail		 Chr4:134100528 Tssr43897 628 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs27563199
MGI SNP Detail		 Chr4:134100589 Tssr43897 689 bp upstream
 SNP C/T T T T T T T T C C T T C T T T T T T T
rs222235353
MGI SNP Detail		 Chr4:134100605 Tssr43897 705 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240130816
MGI SNP Detail		 Chr4:134100606 Tssr43897 706 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs27563198
MGI SNP Detail		 Chr4:134100634 Tssr43897 734 bp upstream
 SNP A/G A A A A A G G A A G A A A A A A A
rs27563197
MGI SNP Detail		 Chr4:134100643 Tssr43897 743 bp upstream
 SNP A/C C C C C A A C A C A C C C
rs243381063
MGI SNP Detail		 Chr4:134100668 Tssr43897 768 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585847195
MGI SNP Detail		 Chr4:134100763 Tssr43897 863 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs27563196
MGI SNP Detail		 Chr4:134100779 Tssr43897 879 bp upstream
 SNP A/C A A A A A A A C C A A C A C A A A A A
rs227549251
MGI SNP Detail		 Chr4:134100819 Tssr43897 919 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs248631612
MGI SNP Detail		 Chr4:134100824 Tssr43897 924 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs27563195
MGI SNP Detail		 Chr4:134100884 Tssr43897 984 bp upstream
 SNP C/T T T T T T T T C T T C T T T T T T
rs49030630
MGI SNP Detail		 Chr4:134100891 Tssr43897 991 bp upstream
 SNP G G G G G G
rs246423943
MGI SNP Detail		 Chr4:134100900 Tssr43897 1000 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs214419638
MGI SNP Detail		 Chr4:134100903 Tssr43897 1003 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237644738
MGI SNP Detail		 Chr4:134100956 Tssr43897 1056 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs249707197
MGI SNP Detail		 Chr4:134100973 Tssr43897 1073 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs211853184
MGI SNP Detail		 Chr4:134100991 Tssr43897 1091 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs230253007
MGI SNP Detail		 Chr4:134101014 Tssr43897 1114 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253410834
MGI SNP Detail		 Chr4:134101037 Tssr43897 1137 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs222307309
MGI SNP Detail		 Chr4:134101080 Tssr43897 1180 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs233937565
MGI SNP Detail		 Chr4:134101109 Tssr43897 1209 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263097207
MGI SNP Detail		 Chr4:134101114 Tssr43897 1214 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs223574701
MGI SNP Detail		 Chr4:134101158 Tssr43897 1258 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs51203033
MGI SNP Detail		 Chr4:134101240 Tssr43897 1340 bp upstream
 SNP C C C C C
rs262038325
MGI SNP Detail		 Chr4:134101308 Tssr43897 1408 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs52565155
MGI SNP Detail		 Chr4:134101386 Tssr43897 1486 bp upstream
 SNP A A A A
rs49899343
MGI SNP Detail		 Chr4:134101518 Tssr43897 1618 bp upstream
 SNP G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs45726064
MGI SNP Detail		 Chr4:134101551 Tssr43897 1651 bp upstream
 SNP C C C C C
rs49989032
MGI SNP Detail		 Chr4:134101554 Tssr43897 1654 bp upstream
 SNP A A A A A
rs240543697
MGI SNP Detail		 Chr4:134101580 Tssr43897 1680 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs51282357
MGI SNP Detail		 Chr4:134101588 Tssr43897 1688 bp upstream
 SNP A A A
rs46154972
MGI SNP Detail		 Chr4:134101590 Tssr43897 1690 bp upstream
 SNP C C C
rs46803174
MGI SNP Detail		 Chr4:134101598 Tssr43897 1698 bp upstream
 SNP A A A
rs211860148
MGI SNP Detail		 Chr4:134101638 Tssr43897 1738 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs49228217
MGI SNP Detail		 Chr4:134101689 Tssr43897 1789 bp upstream
 SNP C C C C C C
rs51239200
MGI SNP Detail		 Chr4:134101768 Tssr43897 1868 bp upstream
 SNP T T T T T T
rs50230461
MGI SNP Detail		 Chr4:134101804 Tssr43897 1904 bp upstream
 SNP C C C C C C
rs49720628
MGI SNP Detail		 Chr4:134101818 Tssr43897 1918 bp upstream
 SNP A A A A A A
rs27563194
MGI SNP Detail		 Chr4:134101872 Tssr43897 1972 bp upstream
 SNP A/G G G G G G G G G G G A G G G
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Showing SNP(s) 1 - 87 of 87
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory