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Mouse SNP Summary
Symbol
Name
ID 		Tssr45412
transcription start site region 45412
MGI:5973179

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Showing SNP(s) 1 - 73 of 73

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226437818
MGI SNP Detail		 Chr5:24597444 Tssr45412 1942 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs241617723
MGI SNP Detail		 Chr5:24597590 Tssr45412 1796 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs29567307
MGI SNP Detail		 Chr5:24597711 Tssr45412 1675 bp upstream
 SNP C/T T T C C
rs227543431
MGI SNP Detail		 Chr5:24597727 Tssr45412 1659 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A A A A A A A A A A G A A A A
rs237562287
MGI SNP Detail		 Chr5:24597729 Tssr45412 1657 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs265242725
MGI SNP Detail		 Chr5:24598035 Rr112283 within coordinates of
Tssr45412 1351 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs32019871
MGI SNP Detail		 Chr5:24598064 Rr112283 within coordinates of
Tssr45412 1322 bp upstream
 SNP A/G A A A A A A A A G A
rs254068228
MGI SNP Detail		 Chr5:24598070 Rr112283 within coordinates of
Tssr45412 1316 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs263901179
MGI SNP Detail		 Chr5:24598125 Rr112283 within coordinates of
Tssr45412 1261 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs262824616
MGI SNP Detail		 Chr5:24598164 Rr112283 within coordinates of
Tssr45412 1222 bp upstream
 SNP A/G A G
rs246157907
MGI SNP Detail		 Chr5:24598169 Rr112283 within coordinates of
Tssr45412 1217 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs223616998
MGI SNP Detail		 Chr5:24598179 Rr112283 within coordinates of
Tssr45412 1207 bp upstream
 SNP C/G C G
rs235129246
MGI SNP Detail		 Chr5:24598244 Rr112283 within coordinates of
Tssr45412 1142 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G
rs251091546
MGI SNP Detail		 Chr5:24598381 Rr112283 within coordinates of
Tssr45412 1005 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32019868
MGI SNP Detail		 Chr5:24598422 Rr112283 within coordinates of
Rr398998 within coordinates of
Tssr45412 964 bp upstream
 SNP A/G G G G G A G A A A G A A G G
rs234931580
MGI SNP Detail		 Chr5:24598439 Rr112283 within coordinates of
Rr398998 within coordinates of
Tssr45412 947 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs261733936
MGI SNP Detail		 Chr5:24598440 Rr112283 within coordinates of
Rr398998 within coordinates of
Tssr45412 946 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs222089995
MGI SNP Detail		 Chr5:24598513 Rr112283 within coordinates of
Rr398998 within coordinates of
Tssr45412 873 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs235389521
MGI SNP Detail		 Chr5:24598523 Rr112283 within coordinates of
Rr398998 within coordinates of
Tssr45412 863 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs251250115
MGI SNP Detail		 Chr5:24598678 Abcb8 within coordinates of
Rr398998 within coordinates of
Tssr45412 708 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221496725
MGI SNP Detail		 Chr5:24598699 Abcb8 within coordinates of
Rr398998 within coordinates of
Tssr45412 687 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C C C T T C T T T T T T T T T T T T C T T T T T T T T T T T T
rs258786410
MGI SNP Detail		 Chr5:24598752 Abcb8 within coordinates of
Tssr45412 634 bp upstream
 SNP A/C A C
rs237513538
MGI SNP Detail		 Chr5:24598780 Abcb8 within coordinates of
Tssr45412 606 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs52394307
MGI SNP Detail		 Chr5:24599072 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 314 bp upstream
 SNP C/G C G
rs262754424
MGI SNP Detail		 Chr5:24599085 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 301 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220125462
MGI SNP Detail		 Chr5:24599092 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 294 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs242032836
MGI SNP Detail		 Chr5:24599114 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 272 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs265903053
MGI SNP Detail		 Chr5:24599157 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 229 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32019865
MGI SNP Detail		 Chr5:24599190 Abcb8 within coordinates of
Rr124925 within coordinates of
Rr398999 within coordinates of
Tssr45412 196 bp upstream
 SNP C/G G G G C C C C C C G
rs246254684
MGI SNP Detail		 Chr5:24599215 Abcb8 within coordinates of
Rr124925 within coordinates of
Rr398999 within coordinates of
Tssr45412 171 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259561893
MGI SNP Detail		 Chr5:24599256 Abcb8 within coordinates of
Cpgi15597 within coordinates of
Rr124925 within coordinates of
Rr398999 within coordinates of
Tssr45412 130 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs225456002
MGI SNP Detail		 Chr5:24599508 Abcb8 within coordinates of
Cpgi15597 within coordinates of
Rr124925 within coordinates of
Tssr45412 80 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs32018982
MGI SNP Detail		 Chr5:24599542 Abcb8 within coordinates of
Cpgi15597 within coordinates of
Rr124925 within coordinates of
Tssr45412 114 bp downstream
 SNP C/T C C C C C C T T T C T C C
rs29558778
MGI SNP Detail		 Chr5:24599589 Abcb8 within coordinates of
Cpgi15597 within coordinates of
Rr124925 within coordinates of
Tssr45412 161 bp downstream
 SNP A/C C C C C C A A A A A A A C
rs236769376
MGI SNP Detail		 Chr5:24599628 Abcb8 within coordinates of
Cpgi15597 within coordinates of
Rr124925 within coordinates of
Tssr45412 200 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs33451831
MGI SNP Detail		 Chr5:24599677 Abcb8 within coordinates of
Cpgi15597 within coordinates of
Rr124925 within coordinates of
Tssr45412 249 bp downstream
 SNP A/G G G G A A G
rs29684543
MGI SNP Detail		 Chr5:24599698 Abcb8 within coordinates of
Cpgi15597 within coordinates of
Rr124925 within coordinates of
Tssr45412 270 bp downstream
 SNP A/G G G G G G A A A G G
rs235317469
MGI SNP Detail		 Chr5:24599702 Abcb8 within coordinates of
Cpgi15597 within coordinates of
Rr124925 within coordinates of
Tssr45412 274 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs29681693
MGI SNP Detail		 Chr5:24599756 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 328 bp downstream
 SNP A/T T T T A A T
rs33522732
MGI SNP Detail		 Chr5:24599767 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 339 bp downstream
 SNP A/T A A A T
rs236265692
MGI SNP Detail		 Chr5:24599800 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 372 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262512829
MGI SNP Detail		 Chr5:24600016 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 588 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs33159177
MGI SNP Detail		 Chr5:24600019 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 591 bp downstream
 SNP C/T C C C C T T C
rs244999185
MGI SNP Detail		 Chr5:24600058 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 630 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs33051344
MGI SNP Detail		 Chr5:24600161 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 733 bp downstream
 SNP G/T G G G T T G
rs33723595
MGI SNP Detail		 Chr5:24600213 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 785 bp downstream
 SNP G/T T T T G
rs240271537
MGI SNP Detail		 Chr5:24600243 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 815 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T
rs259665744
MGI SNP Detail		 Chr5:24600287 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 859 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs222952358
MGI SNP Detail		 Chr5:24600334 Abcb8 within coordinates of
Rr124925 within coordinates of
Tssr45412 906 bp downstream
 SNP A/G G A
rs243723993
MGI SNP Detail		 Chr5:24600578 Abcb8 within coordinates of
Tssr45412 1150 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs243424657
MGI SNP Detail		 Chr5:24600622 Abcb8 within coordinates of
Tssr45412 1194 bp downstream
 SNP A/C C A
rs33486482
MGI SNP Detail		 Chr5:24600648 Abcb8 within coordinates of
Tssr45412 1220 bp downstream
 SNP C/G G G C C G
rs254690176
MGI SNP Detail		 Chr5:24600672 Abcb8 within coordinates of
Tssr45412 1244 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs216894747
MGI SNP Detail		 Chr5:24600674 Abcb8 within coordinates of
Tssr45412 1246 bp downstream
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs225619138
MGI SNP Detail		 Chr5:24600681 Abcb8 within coordinates of
Tssr45412 1253 bp downstream
 SNP A/C A C
rs243633991
MGI SNP Detail		 Chr5:24600683 Abcb8 within coordinates of
Tssr45412 1255 bp downstream
 SNP C/T T C
rs33298736
MGI SNP Detail		 Chr5:24600788 Abcb8 within coordinates of
Tssr45412 1360 bp downstream
 SNP A/T A A T T A
rs33258669
MGI SNP Detail		 Chr5:24600882 Abcb8 within coordinates of
Tssr45412 1454 bp downstream
 SNP A/G A G A A G
rs33307684
MGI SNP Detail		 Chr5:24600892 Abcb8 within coordinates of
Tssr45412 1464 bp downstream
 SNP A/C C C A A C
rs32018975
MGI SNP Detail		 Chr5:24600927 Abcb8 within coordinates of
Tssr45412 1499 bp downstream
 SNP A/G G G G G G A G G G
rs257885855
MGI SNP Detail		 Chr5:24601004 Abcb8 within coordinates of
Tssr45412 1576 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs33295017
MGI SNP Detail		 Chr5:24601018 Abcb8 within coordinates of
Tssr45412 1590 bp downstream
 SNP A/G G A A G
rs235403724
MGI SNP Detail		 Chr5:24601022 Abcb8 within coordinates of
Tssr45412 1594 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs50321339
MGI SNP Detail		 Chr5:24601029 Abcb8 within coordinates of
Tssr45412 1601 bp downstream
 SNP A/C A C C A
rs247684400
MGI SNP Detail		 Chr5:24601033 Abcb8 within coordinates of
Tssr45412 1605 bp downstream
 SNP A/C C A
rs33331644
MGI SNP Detail		 Chr5:24601043 Abcb8 within coordinates of
Tssr45412 1615 bp downstream
 SNP A/T T A A T
rs253531909
MGI SNP Detail		 Chr5:24601047 Abcb8 within coordinates of
Tssr45412 1619 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222343101
MGI SNP Detail		 Chr5:24601053 Abcb8 within coordinates of
Tssr45412 1625 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G
rs33264426
MGI SNP Detail		 Chr5:24601064 Abcb8 within coordinates of
Tssr45412 1636 bp downstream
 SNP A/G A G G A
rs261221692
MGI SNP Detail		 Chr5:24601289 Abcb8 within coordinates of
Rr112284 within coordinates of
Tssr45412 1861 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228865078
MGI SNP Detail		 Chr5:24601301 Abcb8 within coordinates of
Rr112284 within coordinates of
Tssr45412 1873 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs29561847
MGI SNP Detail		 Chr5:24601329 Abcb8 within coordinates of
Rr112284 within coordinates of
Tssr45412 1901 bp downstream
 SNP C/T T T C
rs29561446
MGI SNP Detail		 Chr5:24601396 Abcb8 within coordinates of
Rr112284 within coordinates of
Tssr45412 1968 bp downstream
 SNP A/T A A T
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Showing SNP(s) 1 - 73 of 73
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory