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Mouse SNP Summary
Symbol
Name
ID 		Tssr45420
transcription start site region 45420
MGI:5973187

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Showing SNP(s) 1 - 60 of 60

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs233086073
MGI SNP Detail		 Chr5:24630719 Cpgi15600 within coordinates of
Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1786 bp upstream
 SNP G/T G T
rs33081133
MGI SNP Detail		 Chr5:24630721 Cpgi15600 within coordinates of
Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1784 bp upstream
 SNP A/C A A C C A
rs256456695
MGI SNP Detail		 Chr5:24630742 Cpgi15600 within coordinates of
Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1763 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T T T C C T C C C C C T C C C C C C T C C C C C C C C C C C
rs33676322
MGI SNP Detail		 Chr5:24630760 Cpgi15600 within coordinates of
Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1745 bp upstream
 SNP C/T T T C
rs218755653
MGI SNP Detail		 Chr5:24630787 Cpgi15600 within coordinates of
Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1718 bp upstream
 SNP C/T C T
rs241973997
MGI SNP Detail		 Chr5:24630793 Cpgi15600 within coordinates of
Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1712 bp upstream
 SNP C/T T C
rs33217669
MGI SNP Detail		 Chr5:24630917 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1588 bp upstream
 SNP A/G A A G
rs33215498
MGI SNP Detail		 Chr5:24631003 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1502 bp upstream
 SNP C/T C C C T
rs246410053
MGI SNP Detail		 Chr5:24631004 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1501 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264436466
MGI SNP Detail		 Chr5:24631070 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1435 bp upstream
 SNP C/T C T
rs223748392
MGI SNP Detail		 Chr5:24631072 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1433 bp upstream
 SNP A/G A G
rs251978152
MGI SNP Detail		 Chr5:24631102 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1403 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G T T T G G T G G G G G T G G G G G G T G G G G G G G G G G G
rs245993292
MGI SNP Detail		 Chr5:24631185 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1320 bp upstream
 SNP C/T C T
rs235301850
MGI SNP Detail		 Chr5:24631386 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1119 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs581440824
MGI SNP Detail		 Chr5:24631543 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 962 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs33038540
MGI SNP Detail		 Chr5:24631550 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 955 bp upstream
 SNP A/G G G G A
rs264991675
MGI SNP Detail		 Chr5:24631650 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 855 bp upstream
 SNP A/T A T
rs225863478
MGI SNP Detail		 Chr5:24631683 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 822 bp upstream
 SNP A/G A G
rs263613443
MGI SNP Detail		 Chr5:24631825 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 680 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C A C
rs242114662
MGI SNP Detail		 Chr5:24631906 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 599 bp upstream
 SNP A/C C A
rs584936220
MGI SNP Detail		 Chr5:24631959 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 546 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs254106802
MGI SNP Detail		 Chr5:24632044 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 461 bp upstream
 SNP A/T T A
rs251530151
MGI SNP Detail		 Chr5:24632155 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 350 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221685965
MGI SNP Detail		 Chr5:24632158 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 347 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs237852883
MGI SNP Detail		 Chr5:24632185 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 320 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256669010
MGI SNP Detail		 Chr5:24632284 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 221 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs228432269
MGI SNP Detail		 Chr5:24632442 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 63 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224763140
MGI SNP Detail		 Chr5:24632471 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 34 bp upstream
 SNP A/C A C
rs33716940
MGI SNP Detail		 Chr5:24632687 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 171 bp downstream
 SNP A/G G G A
rs265975930
MGI SNP Detail		 Chr5:24632695 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 179 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs233904844
MGI SNP Detail		 Chr5:24632710 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 194 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs246569418
MGI SNP Detail		 Chr5:24632751 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 235 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33471698
MGI SNP Detail		 Chr5:24632863 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 347 bp downstream
 SNP A/G A G G A
rs29679775
MGI SNP Detail		 Chr5:24632872 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 356 bp downstream
 SNP A/G A G G A
rs52121753
MGI SNP Detail		 Chr5:24632950 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 434 bp downstream
 SNP C/T T T C C T
rs33569730
MGI SNP Detail		 Chr5:24633007 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 491 bp downstream
 SNP A/G G G A A G
rs253205521
MGI SNP Detail		 Chr5:24633151 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 635 bp downstream
 SNP C/T T C
rs237143864
MGI SNP Detail		 Chr5:24633179 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 663 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs33052955
MGI SNP Detail		 Chr5:24633208 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 692 bp downstream
 SNP C/G C C C C G
rs218824601
MGI SNP Detail		 Chr5:24633309 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 793 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29509973
MGI SNP Detail		 Chr5:24633318 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 802 bp downstream
 SNP C/G G G G C C G
rs251702334
MGI SNP Detail		 Chr5:24633335 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 819 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs221676711
MGI SNP Detail		 Chr5:24633437 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 921 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G C G
rs29588470
MGI SNP Detail		 Chr5:24633802 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1286 bp downstream
 SNP C/G C C G
rs262590881
MGI SNP Detail		 Chr5:24633879 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1363 bp downstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29588100
MGI SNP Detail		 Chr5:24633892 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1376 bp downstream
 SNP C/T C C T
rs33383078
MGI SNP Detail		 Chr5:24633904 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1388 bp downstream
 SNP C/T T T C C T
rs33486483
MGI SNP Detail		 Chr5:24633927 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1411 bp downstream
 SNP C/T C C T T C
rs212735346
MGI SNP Detail		 Chr5:24633970 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1454 bp downstream
 SNP C/T T C
rs223670212
MGI SNP Detail		 Chr5:24634068 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1552 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs33723139
MGI SNP Detail		 Chr5:24634104 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1588 bp downstream
 SNP C/G C C C G
rs582118233
MGI SNP Detail		 Chr5:24634130 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1614 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260033309
MGI SNP Detail		 Chr5:24634190 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1674 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs29579896
MGI SNP Detail		 Chr5:24634196 Rr124927 within coordinates of
Slc4a2 within coordinates of
Tssr45420 1680 bp downstream
 SNP C/T T T T C
rs33220745
MGI SNP Detail		 Chr5:24634202 Slc4a2 within coordinates of
Tssr45420 1686 bp downstream
 SNP C/G G G G C
rs264649258
MGI SNP Detail		 Chr5:24634233 Slc4a2 within coordinates of
Tssr45420 1717 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs228538830
MGI SNP Detail		 Chr5:24634240 Slc4a2 within coordinates of
Tssr45420 1724 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33743989
MGI SNP Detail		 Chr5:24634250 Slc4a2 within coordinates of
Tssr45420 1734 bp downstream
 SNP A/G G G G A
rs218863937
MGI SNP Detail		 Chr5:24634276 Slc4a2 within coordinates of
Tssr45420 1760 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs33094423
MGI SNP Detail		 Chr5:24634400 Slc4a2 within coordinates of
Tssr45420 1884 bp downstream
 SNP C/T C C C T
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Showing SNP(s) 1 - 60 of 60
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory