About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr45589
transcription start site region 45589
MGI:5973356

<< first < prev1 next > last >>
Showing SNP(s) 1 - 43 of 43

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259710530
MGI SNP Detail
Chr5:30745995 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1405 bp upstream
SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221018956
MGI SNP Detail
Chr5:30746066 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1334 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs241307177
MGI SNP Detail
Chr5:30746075 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1325 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258721523
MGI SNP Detail
Chr5:30746150 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1250 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29580633
MGI SNP Detail
Chr5:30746201 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1199 bp upstream
SNP A/G A G G G
rs240798145
MGI SNP Detail
Chr5:30746291 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1109 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs265207043
MGI SNP Detail
Chr5:30746344 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1056 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229870409
MGI SNP Detail
Chr5:30746379 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1021 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258245127
MGI SNP Detail
Chr5:30746524 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 876 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs258937935
MGI SNP Detail
Chr5:30746681 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 719 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs33208336
MGI SNP Detail
Chr5:30746726 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 674 bp upstream
SNP C/G C G G G
rs229123399
MGI SNP Detail
Chr5:30747040 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 360 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247929016
MGI SNP Detail
Chr5:30747048 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 352 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216832498
MGI SNP Detail
Chr5:30747062 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 338 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs237432099
MGI SNP Detail
Chr5:30747158 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 242 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249169636
MGI SNP Detail
Chr5:30747260 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 140 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T C C
rs215263485
MGI SNP Detail
Chr5:30747292 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 108 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs236526908
MGI SNP Detail
Chr5:30747362 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 38 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263573407
MGI SNP Detail
Chr5:30747439 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 26 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs220964735
MGI SNP Detail
Chr5:30747557 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 144 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T C C
rs235426315
MGI SNP Detail
Chr5:30747600 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 187 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T G G
rs252843561
MGI SNP Detail
Chr5:30748019 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 606 bp downstream
SNP A/G/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218451180
MGI SNP Detail
Chr5:30748039 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 626 bp downstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243765101
MGI SNP Detail
Chr5:30748055 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 642 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262599174
MGI SNP Detail
Chr5:30748129 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 716 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221718971
MGI SNP Detail
Chr5:30748266 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 853 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246332056
MGI SNP Detail
Chr5:30748279 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 866 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs259068311
MGI SNP Detail
Chr5:30748282 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 869 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229243249
MGI SNP Detail
Chr5:30748455 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1042 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs247866621
MGI SNP Detail
Chr5:30748585 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1172 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256693106
MGI SNP Detail
Chr5:30748593 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1180 bp downstream
SNP A/C C C C A C A A A C A A A A A A A A A A C A C C A A A A C A C A C A C A A A A A A C A A A C A A A C A A C C
rs228977382
MGI SNP Detail
Chr5:30748612 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1199 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252993125
MGI SNP Detail
Chr5:30748613 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1200 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs214801904
MGI SNP Detail
Chr5:30748662 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1249 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs238167636
MGI SNP Detail
Chr5:30748663 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1250 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246092677
MGI SNP Detail
Chr5:30748665 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1252 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215540770
MGI SNP Detail
Chr5:30748762 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1349 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs235535909
MGI SNP Detail
Chr5:30749009 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1596 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs252803478
MGI SNP Detail
Chr5:30749070 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1657 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C T
rs218928197
MGI SNP Detail
Chr5:30749154 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1741 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234379562
MGI SNP Detail
Chr5:30749175 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1762 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262328982
MGI SNP Detail
Chr5:30749232 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1819 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
rs222199029
MGI SNP Detail
Chr5:30749381 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1968 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T
<< first < prev1 next > last >>
Showing SNP(s) 1 - 43 of 43

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory