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Mouse SNP Summary
Symbol
Name
ID 		Tssr45589
transcription start site region 45589
MGI:5973356

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Showing SNP(s) 1 - 43 of 43

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259710530
MGI SNP Detail		 Chr5:30745995 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1405 bp upstream
 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221018956
MGI SNP Detail		 Chr5:30746066 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1334 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs241307177
MGI SNP Detail		 Chr5:30746075 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1325 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258721523
MGI SNP Detail		 Chr5:30746150 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1250 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs29580633
MGI SNP Detail		 Chr5:30746201 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1199 bp upstream
 SNP A/G A G G G
rs240798145
MGI SNP Detail		 Chr5:30746291 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1109 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs265207043
MGI SNP Detail		 Chr5:30746344 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1056 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229870409
MGI SNP Detail		 Chr5:30746379 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 1021 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258245127
MGI SNP Detail		 Chr5:30746524 Cpgi15680 within coordinates of
Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 876 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs258937935
MGI SNP Detail		 Chr5:30746681 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 719 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs33208336
MGI SNP Detail		 Chr5:30746726 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 674 bp upstream
 SNP C/G C G G G
rs229123399
MGI SNP Detail		 Chr5:30747040 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 360 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs247929016
MGI SNP Detail		 Chr5:30747048 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 352 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216832498
MGI SNP Detail		 Chr5:30747062 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 338 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs237432099
MGI SNP Detail		 Chr5:30747158 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 242 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs249169636
MGI SNP Detail		 Chr5:30747260 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 140 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T C T T T T T T C T T T T T T T C T T C C
rs215263485
MGI SNP Detail		 Chr5:30747292 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 108 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs236526908
MGI SNP Detail		 Chr5:30747362 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 38 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs263573407
MGI SNP Detail		 Chr5:30747439 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 26 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs220964735
MGI SNP Detail		 Chr5:30747557 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 144 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T C C
rs235426315
MGI SNP Detail		 Chr5:30747600 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Rr124994 within coordinates of
Tssr45589 187 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T G T T T T T T G T T T T T T T G T T G G
rs252843561
MGI SNP Detail		 Chr5:30748019 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 606 bp downstream
 SNP A/G/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs218451180
MGI SNP Detail		 Chr5:30748039 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 626 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243765101
MGI SNP Detail		 Chr5:30748055 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 642 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262599174
MGI SNP Detail		 Chr5:30748129 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 716 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221718971
MGI SNP Detail		 Chr5:30748266 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 853 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246332056
MGI SNP Detail		 Chr5:30748279 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 866 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs259068311
MGI SNP Detail		 Chr5:30748282 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 869 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs229243249
MGI SNP Detail		 Chr5:30748455 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1042 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs247866621
MGI SNP Detail		 Chr5:30748585 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1172 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs256693106
MGI SNP Detail		 Chr5:30748593 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1180 bp downstream
 SNP A/C C C C A C A A A C A A A A A A A A A A C A C C A A A A C A C A C A C A A A A A A C A A A C A A A C A A C C
rs228977382
MGI SNP Detail		 Chr5:30748612 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1199 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs252993125
MGI SNP Detail		 Chr5:30748613 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1200 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs214801904
MGI SNP Detail		 Chr5:30748662 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1249 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs238167636
MGI SNP Detail		 Chr5:30748663 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1250 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246092677
MGI SNP Detail		 Chr5:30748665 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1252 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs215540770
MGI SNP Detail		 Chr5:30748762 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1349 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs235535909
MGI SNP Detail		 Chr5:30749009 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1596 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs252803478
MGI SNP Detail		 Chr5:30749070 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1657 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C T
rs218928197
MGI SNP Detail		 Chr5:30749154 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1741 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs234379562
MGI SNP Detail		 Chr5:30749175 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1762 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs262328982
MGI SNP Detail		 Chr5:30749232 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1819 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T
rs222199029
MGI SNP Detail		 Chr5:30749381 Del(5D5Mit348-D5Mit389)6Jcs within coordinates of
Kcnk3 within coordinates of
Tssr45589 1968 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T
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Showing SNP(s) 1 - 43 of 43
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory