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Mouse SNP Summary
Symbol
Name
ID 		Tssr46210
transcription start site region 46210
MGI:5973977

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239879798
MGI SNP Detail		 Chr5:53422479 Gm40303 within coordinates of
Tssr46210 1993 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T T T T T
rs264679567
MGI SNP Detail		 Chr5:53422487 Gm40303 within coordinates of
Tssr46210 1985 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs228868395
MGI SNP Detail		 Chr5:53422488 Gm40303 within coordinates of
Tssr46210 1984 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs245008425
MGI SNP Detail		 Chr5:53422496 Gm40303 within coordinates of
Tssr46210 1976 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs263982454
MGI SNP Detail		 Chr5:53422520 Gm40303 within coordinates of
Tssr46210 1952 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G G G G G G G A G A G G G G G G G G G G
rs583231227
MGI SNP Detail		 Chr5:53422522 Gm40303 within coordinates of
Tssr46210 1950 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs586876841
MGI SNP Detail		 Chr5:53422578 Gm40303 within coordinates of
Tssr46210 1894 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C C C C C C C G C G C C C C C C C C C C
rs581049311
MGI SNP Detail		 Chr5:53422618 Gm40303 within coordinates of
Tssr46210 1854 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs229140328
MGI SNP Detail		 Chr5:53422750 Gm40303 within coordinates of
Tssr46210 1722 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs245124576
MGI SNP Detail		 Chr5:53422766 Gm40303 within coordinates of
Tssr46210 1706 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215792392
MGI SNP Detail		 Chr5:53422783 Gm40303 within coordinates of
Tssr46210 1689 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T C T T T T T T C T C T T T T T T T T T T
rs225071833
MGI SNP Detail		 Chr5:53422937 Gm40303 within coordinates of
Tssr46210 1535 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs251290581
MGI SNP Detail		 Chr5:53422988 Gm40303 within coordinates of
Tssr46210 1484 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211831288
MGI SNP Detail		 Chr5:53422991 Gm40303 within coordinates of
Tssr46210 1481 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs235129444
MGI SNP Detail		 Chr5:53422998 Gm40303 within coordinates of
Tssr46210 1474 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32937697
MGI SNP Detail		 Chr5:53423039 Gm40303 within coordinates of
Tssr46210 1433 bp upstream
 SNP C/T T T T T T T C T T T C T T T
rs32937695
MGI SNP Detail		 Chr5:53423092 Gm40303 within coordinates of
Tssr46210 1380 bp upstream
 SNP A/G A A A A A A G A A A G A A A
rs234278716
MGI SNP Detail		 Chr5:53423096 Gm40303 within coordinates of
Tssr46210 1376 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G A G G G G
rs253893003
MGI SNP Detail		 Chr5:53423130 Gm40303 within coordinates of
Tssr46210 1342 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219784067
MGI SNP Detail		 Chr5:53423145 Gm40303 within coordinates of
Tssr46210 1327 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G A G G G G G G A G A G G G G G G G G G G
rs239941612
MGI SNP Detail		 Chr5:53423278 Gm40303 within coordinates of
Tssr46210 1194 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C T C C C C C C T C T C C C C C C C C C C
rs255618879
MGI SNP Detail		 Chr5:53423296 Gm40303 within coordinates of
Tssr46210 1176 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T A T T T T T A T T T T
rs221186787
MGI SNP Detail		 Chr5:53423321 Gm40303 within coordinates of
Tssr46210 1151 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247493323
MGI SNP Detail		 Chr5:53423351 Gm40303 within coordinates of
Tssr46210 1121 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C T C C C C C C T C T C C C C C C C C C C
rs265921230
MGI SNP Detail		 Chr5:53423363 Gm40303 within coordinates of
Tssr46210 1109 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs229240318
MGI SNP Detail		 Chr5:53423393 Gm40303 within coordinates of
Tssr46210 1079 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs239181614
MGI SNP Detail		 Chr5:53423396 Gm40303 within coordinates of
Tssr46210 1076 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs258010655
MGI SNP Detail		 Chr5:53423569 Gm40303 within coordinates of
Tssr46210 903 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G A G G G G G G G G G G
rs225140499
MGI SNP Detail		 Chr5:53423631 Gm40303 within coordinates of
Tssr46210 841 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C T C C C C C C C C C C
rs256017155
MGI SNP Detail		 Chr5:53423633 Gm40303 within coordinates of
Tssr46210 839 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G T G G G G G G G G G G
rs211796950
MGI SNP Detail		 Chr5:53423682 Gm40303 within coordinates of
Tssr46210 790 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A G A A A A A G A A G A
rs228870059
MGI SNP Detail		 Chr5:53423696 Gm40303 within coordinates of
Tssr46210 776 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs253591046
MGI SNP Detail		 Chr5:53423723 Gm40303 within coordinates of
Tssr46210 749 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T T T T T T T C T T T T T T C T C T T T T T T T T T T
rs217087015
MGI SNP Detail		 Chr5:53423727 Gm40303 within coordinates of
Tssr46210 745 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G A G G G G G G A G A G G G G G G G G G G
rs234396173
MGI SNP Detail		 Chr5:53423738 Gm40303 within coordinates of
Tssr46210 734 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A G A A A A A A G A G A A A A A A A A A A
rs247613148
MGI SNP Detail		 Chr5:53423750 Gm40303 within coordinates of
Tssr46210 722 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C C C C C C C T C C C C C C T C T C C C C C C C C C C
rs213953980
MGI SNP Detail		 Chr5:53423822 Gm40303 within coordinates of
Tssr46210 650 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T C T T T T T T T T T T
rs237221873
MGI SNP Detail		 Chr5:53423881 Gm40303 within coordinates of
Tssr46210 591 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A G A A A A A G A A A A
rs261049920
MGI SNP Detail		 Chr5:53423921 Gm40303 within coordinates of
Tssr46210 551 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T C T T T T T T T T T T
rs221752318
MGI SNP Detail		 Chr5:53423931 Gm40303 within coordinates of
Tssr46210 541 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A G A A A A A A A A A A
rs242290195
MGI SNP Detail		 Chr5:53423964 Gm40303 within coordinates of
Tssr46210 508 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C C G C C C C C C G C G C C C C C G C C C C
rs260964872
MGI SNP Detail		 Chr5:53424032 Gm40303 within coordinates of
Rr125213 within coordinates of
Tssr46210 440 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs220819699
MGI SNP Detail		 Chr5:53424047 Gm40303 within coordinates of
Rr125213 within coordinates of
Tssr46210 425 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32943770
MGI SNP Detail		 Chr5:53424056 Gm40303 within coordinates of
Rr125213 within coordinates of
Tssr46210 416 bp upstream
 SNP G/T G G G G G G T G G G T G G G
rs584810256
MGI SNP Detail		 Chr5:53424090 Gm40303 within coordinates of
Rr125213 within coordinates of
Tssr46210 382 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C A C C C C C C A C A C C C C C C C C C C
rs586949048
MGI SNP Detail		 Chr5:53424100 Gm40303 within coordinates of
Rr125213 within coordinates of
Tssr46210 372 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G A G G G G G G A G A G G G G G G G G G G
rs258024667
MGI SNP Detail		 Chr5:53424162 Gm40303 within coordinates of
Rr125213 within coordinates of
Tssr46210 310 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6199882
MGI SNP Detail		 Chr5:53424276 Cpgi15867 within coordinates of
Gm40303 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Tssr46210 196 bp upstream
 SNP A/G A G
rs6200374
MGI SNP Detail		 Chr5:53424334 Cpgi15867 within coordinates of
Gm40303 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Tssr46210 138 bp upstream
 SNP A/C A C
rs6200420
MGI SNP Detail		 Chr5:53424361 Cpgi15867 within coordinates of
Gm40303 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Tssr46210 111 bp upstream
 SNP G/T T G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs6200448
MGI SNP Detail		 Chr5:53424381 Cpgi15867 within coordinates of
Gm40303 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Tssr46210 91 bp upstream
 SNP C/T T C
rs258934128
MGI SNP Detail		 Chr5:53424479 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Smim20 within coordinates of
Tssr46210 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G
rs261052537
MGI SNP Detail		 Chr5:53424497 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Smim20 within coordinates of
Tssr46210 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6213410
MGI SNP Detail		 Chr5:53424506 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Smim20 within coordinates of
Tssr46210 within coordinates of
 SNP C/T T C
rs6213411
MGI SNP Detail		 Chr5:53424509 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Smim20 within coordinates of
Tssr46210 within coordinates of
 SNP G/T G T
rs213975599
MGI SNP Detail		 Chr5:53424526 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Smim20 within coordinates of
Tssr46210 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs6213782
MGI SNP Detail		 Chr5:53424534 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Smim20 within coordinates of
Tssr46210 3 bp downstream
 SNP A/G A G
rs6213801
MGI SNP Detail		 Chr5:53424543 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Smim20 within coordinates of
Tssr46210 12 bp downstream
 SNP A/G A G
rs581432882
MGI SNP Detail		 Chr5:53424554 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Rr399079 within coordinates of
Smim20 within coordinates of
Tssr46210 23 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C C C C C C G C C C C C C G C G C C C C C C C C C
rs6213857
MGI SNP Detail		 Chr5:53424583 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 52 bp downstream
 SNP G/T T G
rs6214753
MGI SNP Detail		 Chr5:53424732 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 201 bp downstream
 SNP C/T C T
rs249396160
MGI SNP Detail		 Chr5:53424791 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 260 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs213568198
MGI SNP Detail		 Chr5:53424817 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 286 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs239720291
MGI SNP Detail		 Chr5:53424833 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 302 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs6215322
MGI SNP Detail		 Chr5:53424856 Cpgi15867 within coordinates of
Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 325 bp downstream
 SNP A/T A T
rs220831005
MGI SNP Detail		 Chr5:53424879 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 348 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233599810
MGI SNP Detail		 Chr5:53424894 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 363 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs251942295
MGI SNP Detail		 Chr5:53424907 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 376 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T A T T T T T T A T A T T T T T A T T T T
rs219330296
MGI SNP Detail		 Chr5:53425083 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 552 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G T G G G G G G T G T G G G G G T G G G G
rs246826265
MGI SNP Detail		 Chr5:53425097 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 566 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A C A A A A A A A A A A
rs261429271
MGI SNP Detail		 Chr5:53425098 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 567 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs220915386
MGI SNP Detail		 Chr5:53425155 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 624 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T T T T T T T G T T T T T T G T G T T T T T T T T T T
rs247207282
MGI SNP Detail		 Chr5:53425175 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 644 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G G G G G G G A G G G G G G A G A G G G G G G G G G G
rs261063061
MGI SNP Detail		 Chr5:53425189 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 658 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs227062408
MGI SNP Detail		 Chr5:53425226 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 695 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T C T T T T T C T T T T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs240952565
MGI SNP Detail		 Chr5:53425235 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 704 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T C T T T T T C T T T T
rs32943768
MGI SNP Detail		 Chr5:53425334 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 803 bp downstream
 SNP C/T T T T T T T C T T T C T T T
rs257211951
MGI SNP Detail		 Chr5:53425369 Rr125213 within coordinates of
Smim20 within coordinates of
Tssr46210 838 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T
rs32943766
MGI SNP Detail		 Chr5:53425409 Smim20 within coordinates of
Tssr46210 878 bp downstream
 SNP A/G A A A A A A G A A A G A A
rs253369728
MGI SNP Detail		 Chr5:53425672 Smim20 within coordinates of
Tssr46210 1141 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A G A A A A A A A A A A
rs213147248
MGI SNP Detail		 Chr5:53425704 Smim20 within coordinates of
Tssr46210 1173 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A G A A A A A A G A G A A A A A A A A A A
rs234361199
MGI SNP Detail		 Chr5:53425726 Smim20 within coordinates of
Tssr46210 1195 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs247619820
MGI SNP Detail		 Chr5:53425728 Smim20 within coordinates of
Tssr46210 1197 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A G A A A A A G A A A A
rs215333478
MGI SNP Detail		 Chr5:53425783 Smim20 within coordinates of
Tssr46210 1252 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A G A A A A A A A A A A
rs233653400
MGI SNP Detail		 Chr5:53425792 Smim20 within coordinates of
Tssr46210 1261 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C T C C C C C C C C C C
rs249808759
MGI SNP Detail		 Chr5:53425818 Rr113655 within coordinates of
Smim20 within coordinates of
Tssr46210 1287 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T C T T T T T C T T T T
rs215217992
MGI SNP Detail		 Chr5:53425822 Rr113655 within coordinates of
Smim20 within coordinates of
Tssr46210 1291 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T C T T T T T T T T T T
rs237023690
MGI SNP Detail		 Chr5:53425824 Rr113655 within coordinates of
Smim20 within coordinates of
Tssr46210 1293 bp downstream
 SNP C/T C C C C C C T T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C T C C C C
rs260865685
MGI SNP Detail		 Chr5:53425842 Rr113655 within coordinates of
Smim20 within coordinates of
Tssr46210 1311 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T C T T T T T C T T T T
rs221332673
MGI SNP Detail		 Chr5:53425898 Rr113655 within coordinates of
Smim20 within coordinates of
Tssr46210 1367 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A G A A A A A A A A A A
rs241852852
MGI SNP Detail		 Chr5:53425919 Rr113655 within coordinates of
Smim20 within coordinates of
Tssr46210 1388 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs32943764
MGI SNP Detail		 Chr5:53425931 Rr113655 within coordinates of
Smim20 within coordinates of
Tssr46210 1400 bp downstream
 SNP C/G G G G G G G C G G G C G G G
rs220845385
MGI SNP Detail		 Chr5:53425945 Rr113655 within coordinates of
Smim20 within coordinates of
Tssr46210 1414 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T
rs241056548
MGI SNP Detail		 Chr5:53426031 Smim20 within coordinates of
Tssr46210 1500 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C T C C C C
rs257273703
MGI SNP Detail		 Chr5:53426036 Smim20 within coordinates of
Tssr46210 1505 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs585089652
MGI SNP Detail		 Chr5:53426045 Smim20 within coordinates of
Tssr46210 1514 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230770203
MGI SNP Detail		 Chr5:53426051 Smim20 within coordinates of
Tssr46210 1520 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A G A A A A A G A A A A
rs241668648
MGI SNP Detail		 Chr5:53426089 Smim20 within coordinates of
Tssr46210 1558 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T C T T T T T C T T T T
rs264946497
MGI SNP Detail		 Chr5:53426127 Smim20 within coordinates of
Tssr46210 1596 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs32942942
MGI SNP Detail		 Chr5:53426160 Smim20 within coordinates of
Tssr46210 1629 bp downstream
 SNP C/T T T T T T T C T T T C T T T
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Showing SNP(s) 1 - 100 of 111
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory