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Mouse SNP Summary
Symbol
Name
ID 		Tssr46288
transcription start site region 46288
MGI:5974055

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Showing SNP(s) 1 - 47 of 47

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259567751
MGI SNP Detail		 Chr5:57872929 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1946 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs29734617
MGI SNP Detail		 Chr5:57873026 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1849 bp upstream
 SNP C/T T C T C C C
rs235321104
MGI SNP Detail		 Chr5:57873028 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1847 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C C A A A A C A C A A A A C A A A A A A A A A A A A
rs13478269
MGI SNP Detail		 Chr5:57873193 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1682 bp upstream
 SNP G/T G G T T T T T T G G G G G T G T T G T T T T T G G T G G T G G T G T T G T G T T G T T G T T G G
rs218866548
MGI SNP Detail		 Chr5:57873313 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1562 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236198928
MGI SNP Detail		 Chr5:57873321 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1554 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs265386677
MGI SNP Detail		 Chr5:57873374 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1501 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs222958041
MGI SNP Detail		 Chr5:57873460 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1415 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs583138611
MGI SNP Detail		 Chr5:57873469 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1406 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C C T T T T C T C T T T C T T T T T T C T T T T
rs249645359
MGI SNP Detail		 Chr5:57873534 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1341 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs263391765
MGI SNP Detail		 Chr5:57873593 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1282 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs227052469
MGI SNP Detail		 Chr5:57873713 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1162 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248527095
MGI SNP Detail		 Chr5:57873721 4932441J04Rik within coordinates of
Cpgi15874 within coordinates of
Gm73136 within coordinates of
Tssr46288 1154 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T T C C C C T C T C C C C T C C C C C C C T C C C C
rs260483414
MGI SNP Detail		 Chr5:57873756 4932441J04Rik within coordinates of
Gm73136 within coordinates of
Tssr46288 1119 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A A G G G G A G A G G G G A G G G G G G G A G G G G
rs224853558
MGI SNP Detail		 Chr5:57873774 4932441J04Rik within coordinates of
Gm73136 within coordinates of
Tssr46288 1101 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33147870
MGI SNP Detail		 Chr5:57873860 4932441J04Rik within coordinates of
Gm73136 within coordinates of
Tssr46288 1015 bp upstream
 SNP C C C C C
rs215088005
MGI SNP Detail		 Chr5:57873888 4932441J04Rik within coordinates of
Gm73136 within coordinates of
Tssr46288 987 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs236163706
MGI SNP Detail		 Chr5:57873913 4932441J04Rik within coordinates of
Gm73136 within coordinates of
Tssr46288 962 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs258239344
MGI SNP Detail		 Chr5:57873947 4932441J04Rik within coordinates of
Gm73136 within coordinates of
Tssr46288 928 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G G A A A A G A G A A A A G A A A A A A A A A A A A
rs215775198
MGI SNP Detail		 Chr5:57874000 4932441J04Rik within coordinates of
Rr611759 within coordinates of
Tssr46288 875 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs235267722
MGI SNP Detail		 Chr5:57874125 4932441J04Rik within coordinates of
Tssr46288 750 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs252747499
MGI SNP Detail		 Chr5:57874227 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 648 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C C T T T T C T C T T T T C T T T T T T T C T T T T
rs218853956
MGI SNP Detail		 Chr5:57874229 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 646 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230227802
MGI SNP Detail		 Chr5:57874361 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 514 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs258104323
MGI SNP Detail		 Chr5:57874629 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 246 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222508667
MGI SNP Detail		 Chr5:57874633 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 242 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C T T C C C C T C T C C C C T C C C C C C C C C C C C
rs246818161
MGI SNP Detail		 Chr5:57874651 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 224 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs29587165
MGI SNP Detail		 Chr5:57874699 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 176 bp upstream
 SNP C/G C G C G C G
rs6235267
MGI SNP Detail		 Chr5:57874724 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 151 bp upstream
 SNP A/T T A
rs6235286
MGI SNP Detail		 Chr5:57874734 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 141 bp upstream
 SNP C/G C G
rs6248245
MGI SNP Detail		 Chr5:57874769 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 106 bp upstream
 SNP C/G G C
rs224787633
MGI SNP Detail		 Chr5:57874788 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 87 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs6248298
MGI SNP Detail		 Chr5:57874799 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46288 76 bp upstream
 SNP G/T T G
rs262699019
MGI SNP Detail		 Chr5:57874824 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Tssr46287 within coordinates of
Tssr46288 51 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587336278
MGI SNP Detail		 Chr5:57874992 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Rr611760 within coordinates of
Tssr46288 95 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T
rs6249868
MGI SNP Detail		 Chr5:57875057 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Rr611760 within coordinates of
Tssr46288 160 bp downstream
 SNP C/T C T
rs253092637
MGI SNP Detail		 Chr5:57875176 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Rr611760 within coordinates of
Tssr46288 279 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A
rs215205298
MGI SNP Detail		 Chr5:57875181 4932441J04Rik within coordinates of
Cpgi15875 within coordinates of
Rr611760 within coordinates of
Tssr46288 284 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
rs235251841
MGI SNP Detail		 Chr5:57875264 Cpgi15875 within coordinates of
Rr611760 within coordinates of
Tssr46288 367 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246796235
MGI SNP Detail		 Chr5:57875510 Cpgi15875 within coordinates of
Pcdh7 within coordinates of
Rr611761 within coordinates of
Tssr46288 613 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs212991384
MGI SNP Detail		 Chr5:57875691 Cpgi15875 within coordinates of
Pcdh7 within coordinates of
Rr611761 within coordinates of
Tssr46288 794 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs230123273
MGI SNP Detail		 Chr5:57875703 Cpgi15875 within coordinates of
Pcdh7 within coordinates of
Rr611761 within coordinates of
Tssr46288 806 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs262555454
MGI SNP Detail		 Chr5:57875877 Cpgi15875 within coordinates of
Pcdh7 within coordinates of
Rr611761 within coordinates of
Tssr46288 980 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs214090094
MGI SNP Detail		 Chr5:57876162 Cpgi15875 within coordinates of
Pcdh7 within coordinates of
Rr611761 within coordinates of
Tssr46288 1265 bp downstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A A T T T T A T A T T T T A T T T T T T T T T T T T
rs241504433
MGI SNP Detail		 Chr5:57876167 Cpgi15875 within coordinates of
Pcdh7 within coordinates of
Rr611761 within coordinates of
Tssr46288 1270 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A A G G G G A G A G G G G A G G G G G G G G G G G G
rs259003405
MGI SNP Detail		 Chr5:57876178 Cpgi15875 within coordinates of
Pcdh7 within coordinates of
Rr611761 within coordinates of
Tssr46288 1281 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C
rs223853120
MGI SNP Detail		 Chr5:57876575 Cpgi15875 within coordinates of
Pcdh7 within coordinates of
Tssr46288 1678 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C A A C C C C A C A C C C C A C C C C C C C C C C C C
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Showing SNP(s) 1 - 47 of 47
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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