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Mouse SNP Summary
Symbol
Name
ID
Tssr46675
transcription start site region 46675
MGI:5974442

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Showing SNP(s) 1 - 74 of 74

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs256679657
MGI SNP Detail
Chr5:74694316 Tssr46675 1880 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G G G G G G T G G G G G G G G G G G G
rs33275126
MGI SNP Detail
Chr5:74694368 Tssr46675 1828 bp upstream
SNP C/T C C T
rs242627915
MGI SNP Detail
Chr5:74694407 Tssr46675 1789 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260814178
MGI SNP Detail
Chr5:74694492 Tssr46675 1704 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A A A A A A A A T A A A A A A A A A A A A
rs233303740
MGI SNP Detail
Chr5:74694495 Tssr46675 1701 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C
rs583668166
MGI SNP Detail
Chr5:74694502 Tssr46675 1694 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C
rs252345349
MGI SNP Detail
Chr5:74694540 Tssr46675 1656 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs265293254
MGI SNP Detail
Chr5:74694558 Tssr46675 1638 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs230508634
MGI SNP Detail
Chr5:74694617 Tssr46675 1579 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs254627205
MGI SNP Detail
Chr5:74694629 Tssr46675 1567 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A A A A A A A A C A A A A A A A A A A A A
rs212442983
MGI SNP Detail
Chr5:74694671 Tssr46675 1525 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs235452547
MGI SNP Detail
Chr5:74694709 Tssr46675 1487 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T G T T G T T T T G T T T T T T T T T T T T G T T T T T T T G T T T T
rs246946896
MGI SNP Detail
Chr5:74694714 Tssr46675 1482 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs216473132
MGI SNP Detail
Chr5:74694723 Tssr46675 1473 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240651928
MGI SNP Detail
Chr5:74694762 Tssr46675 1434 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258348804
MGI SNP Detail
Chr5:74694800 Tssr46675 1396 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs222699776
MGI SNP Detail
Chr5:74694863 Tssr46675 1333 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T
rs235869909
MGI SNP Detail
Chr5:74694899 Tssr46675 1297 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs250444158
MGI SNP Detail
Chr5:74694954 Tssr46675 1242 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs218135370
MGI SNP Detail
Chr5:74694961 Tssr46675 1235 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242681748
MGI SNP Detail
Chr5:74695030 Tssr46675 1166 bp upstream
SNP C/G G G G G G G C C G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G G G G
rs260491192
MGI SNP Detail
Chr5:74695040 Tssr46675 1156 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225145776
MGI SNP Detail
Chr5:74695120 Tssr46675 1076 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G G G G G G T G G G G G G G T G G G G
rs48098846
MGI SNP Detail
Chr5:74695206 Tssr46675 990 bp upstream
SNP C/T C T T
rs262820904
MGI SNP Detail
Chr5:74695209 Tssr46675 987 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230341619
MGI SNP Detail
Chr5:74695216 Tssr46675 980 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A A A A A A A A T A A A A A A A T A A A A
rs243124339
MGI SNP Detail
Chr5:74695264 Tssr46675 932 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A A A A A A A A T A A A A A A A A A A A
rs254276464
MGI SNP Detail
Chr5:74695404 Tssr46675 792 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs36356021
MGI SNP Detail
Chr5:74695467 Tssr46675 729 bp upstream
SNP A/G A G G
rs29586220
MGI SNP Detail
Chr5:74695497 Tssr46675 699 bp upstream
SNP C/T C C T
rs217461081
MGI SNP Detail
Chr5:74695649 Tssr46675 547 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs238467979
MGI SNP Detail
Chr5:74695682 Tssr46675 514 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs6306166
MGI SNP Detail
Chr5:74695690 Tssr46675 506 bp upstream
SNP A/C C A
rs6306633
MGI SNP Detail
Chr5:74695756 Tssr46675 440 bp upstream
SNP A/G G A
rs6307127
MGI SNP Detail
Chr5:74695837 Tssr46675 359 bp upstream
SNP C/T C C T T
rs250099980
MGI SNP Detail
Chr5:74695842 Tssr46675 354 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs6307229
MGI SNP Detail
Chr5:74695890 Rr399136 within coordinates of
Tssr46675 306 bp upstream
SNP A/G G A
rs6308243
MGI SNP Detail
Chr5:74696040 Cpgi15972 within coordinates of
Rr399136 within coordinates of
Tssr46675 156 bp upstream
SNP G/T G T
rs254287571
MGI SNP Detail
Chr5:74696156 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Rr399136 within coordinates of
Tssr46674 within coordinates of
Tssr46675 40 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A
rs224994328
MGI SNP Detail
Chr5:74696161 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Rr399136 within coordinates of
Tssr46674 within coordinates of
Tssr46675 35 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T C T T T T
rs245041878
MGI SNP Detail
Chr5:74696193 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 3 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs262564384
MGI SNP Detail
Chr5:74696310 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 91 bp downstream
Tssr46676 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C T C C C C C C C T C C C C
rs222738017
MGI SNP Detail
Chr5:74696394 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 175 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G A G G G G G G G G G G G
rs37265560
MGI SNP Detail
Chr5:74696485 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 266 bp downstream
SNP A/G G A
rs253925509
MGI SNP Detail
Chr5:74696514 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 295 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs229583210
MGI SNP Detail
Chr5:74696535 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 316 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs241137073
MGI SNP Detail
Chr5:74696600 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 381 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G
rs263813633
MGI SNP Detail
Chr5:74696636 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 417 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C G C C C C C C C C C C C
rs232487982
MGI SNP Detail
Chr5:74696638 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 419 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C T C C C C
rs251775815
MGI SNP Detail
Chr5:74696697 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 478 bp downstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214927140
MGI SNP Detail
Chr5:74696811 Cpgi15972 within coordinates of
Fip1l1 within coordinates of
Tssr46675 592 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs225496819
MGI SNP Detail
Chr5:74696882 Fip1l1 within coordinates of
Tssr46675 663 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G G G G A G G G G
rs243976226
MGI SNP Detail
Chr5:74696914 Fip1l1 within coordinates of
Tssr46675 695 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G G G G A G G G G
rs211712905
MGI SNP Detail
Chr5:74696968 Fip1l1 within coordinates of
Tssr46675 749 bp downstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs236371812
MGI SNP Detail
Chr5:74697003 Fip1l1 within coordinates of
Tssr46675 784 bp downstream
SNP G/T G G G G G G T T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G
rs254418085
MGI SNP Detail
Chr5:74697004 Fip1l1 within coordinates of
Tssr46675 785 bp downstream
SNP A/T A A A A A A T T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A
rs216625173
MGI SNP Detail
Chr5:74697006 Fip1l1 within coordinates of
Tssr46675 787 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C T C C C C
rs239872857
MGI SNP Detail
Chr5:74697104 Fip1l1 within coordinates of
Tssr46675 885 bp downstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs257733987
MGI SNP Detail
Chr5:74697138 Fip1l1 within coordinates of
Tssr46675 919 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs222336169
MGI SNP Detail
Chr5:74697160 Fip1l1 within coordinates of
Tssr46675 941 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236844046
MGI SNP Detail
Chr5:74697203 Fip1l1 within coordinates of
Tssr46675 984 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs36845553
MGI SNP Detail
Chr5:74697260 Fip1l1 within coordinates of
Tssr46675 1041 bp downstream
SNP A/T T A
rs222805521
MGI SNP Detail
Chr5:74697311 Fip1l1 within coordinates of
Tssr46675 1092 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs581651990
MGI SNP Detail
Chr5:74697336 Fip1l1 within coordinates of
Tssr46675 1117 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240889245
MGI SNP Detail
Chr5:74697362 Fip1l1 within coordinates of
Tssr46675 1143 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
rs265824705
MGI SNP Detail
Chr5:74697390 Fip1l1 within coordinates of
Tssr46675 1171 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A A A A A A A A T A A A A A A A A A A A A
rs48750833
MGI SNP Detail
Chr5:74697751 Fip1l1 within coordinates of
Tssr46675 1532 bp downstream
SNP A/G G G A G
rs247205106
MGI SNP Detail
Chr5:74697755 Fip1l1 within coordinates of
Tssr46675 1536 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G G G G G G T G G G G G G G T G G G G
rs262489078
MGI SNP Detail
Chr5:74697826 Fip1l1 within coordinates of
Tssr46675 1607 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs225555553
MGI SNP Detail
Chr5:74697882 Fip1l1 within coordinates of
Tssr46675 1663 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs244030548
MGI SNP Detail
Chr5:74697887 Fip1l1 within coordinates of
Tssr46675 1668 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs211820329
MGI SNP Detail
Chr5:74697983 Fip1l1 within coordinates of
Tssr46675 1764 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs228962157
MGI SNP Detail
Chr5:74698158 Fip1l1 within coordinates of
Tssr46675 1939 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C T C C C C
rs253622133
MGI SNP Detail
Chr5:74698167 Fip1l1 within coordinates of
Tssr46675 1948 bp downstream
SNP A/G G G G G G A A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G
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Showing SNP(s) 1 - 74 of 74

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory