About   Help   FAQ
Mouse SNP Summary
Symbol
Name
ID
Tssr46684
transcription start site region 46684
MGI:5974451

<< first < prev1 next > last >>
Showing SNP(s) 1 - 67 of 67

Your search exceeds the maximum result limit of 100,000 SNPs that can be displayed or exported to text. Use filters to refine your search or select a sub-region from the SNP Density Heatmap.
Loading...
Show only selected strains with alleles     Show all selected strains    
Drag columns to re-order.   Column order is reset with Filter or Show option change.
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225936449
MGI SNP Detail
Chr5:75310156 Rr125352 within coordinates of
Tssr46684 1885 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C A C C A C C C C A C C C C C C C C C C C C A C C C C C C C A C C C C
rs241441383
MGI SNP Detail
Chr5:75310158 Rr125352 within coordinates of
Tssr46684 1883 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T A T T T T A T T T T T T T T T T T T A T T T T T T T A T T T T
rs259319739
MGI SNP Detail
Chr5:75310174 Rr125352 within coordinates of
Tssr46684 1867 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs220880729
MGI SNP Detail
Chr5:75310243 Rr125352 within coordinates of
Tssr46684 1798 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs239599464
MGI SNP Detail
Chr5:75310312 Rr125352 within coordinates of
Tssr46684 1729 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs262331544
MGI SNP Detail
Chr5:75310320 Rr125352 within coordinates of
Tssr46684 1721 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs229257934
MGI SNP Detail
Chr5:75310372 Rr125352 within coordinates of
Tssr46684 1669 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G T G G G G T G G G G G G G G G G G G T G G G G G G G T G G G G
rs49133818
MGI SNP Detail
Chr5:75310400 Rr125352 within coordinates of
Tssr46684 1641 bp upstream
SNP G/T T T T T T T G G T T G T T T T T T T G T G G T G G T T T T T T T T T T T G G T G T T T G T G
rs266059396
MGI SNP Detail
Chr5:75310404 Rr125352 within coordinates of
Tssr46684 1637 bp upstream
SNP A/C A A A A A A C A A A A C C A C C A A A A A A A A C A C
rs214989804
MGI SNP Detail
Chr5:75310517 Rr125352 within coordinates of
Tssr46684 1524 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs232339389
MGI SNP Detail
Chr5:75310573 Rr125352 within coordinates of
Tssr46684 1468 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C
rs244130113
MGI SNP Detail
Chr5:75310598 Rr125352 within coordinates of
Tssr46684 1443 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs213206401
MGI SNP Detail
Chr5:75310626 Rr125352 within coordinates of
Tssr46684 1415 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs236763278
MGI SNP Detail
Chr5:75310688 Rr125352 within coordinates of
Tssr46684 1353 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs260927458
MGI SNP Detail
Chr5:75310700 Rr125352 within coordinates of
Tssr46684 1341 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C T C T C
rs226248034
MGI SNP Detail
Chr5:75310860 Rr125352 within coordinates of
Tssr46684 1181 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A T A T A
rs234871458
MGI SNP Detail
Chr5:75310988 Rr125352 within coordinates of
Tssr46684 1053 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs252985275
MGI SNP Detail
Chr5:75311060 Rr125352 within coordinates of
Tssr46684 981 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs220455421
MGI SNP Detail
Chr5:75311080 Rr125352 within coordinates of
Tssr46684 961 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs239581305
MGI SNP Detail
Chr5:75311103 Rr125352 within coordinates of
Tssr46684 938 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs584804558
MGI SNP Detail
Chr5:75311300 Rr125352 within coordinates of
Tssr46684 741 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs265048832
MGI SNP Detail
Chr5:75311366 Rr125352 within coordinates of
Tssr46684 675 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T T T T T T T T C T T T T T T T C T T T T
rs221446097
MGI SNP Detail
Chr5:75311403 Rr125352 within coordinates of
Tssr46684 638 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs36791294
MGI SNP Detail
Chr5:75311462 Rr125352 within coordinates of
Tssr46684 579 bp upstream
SNP C/T C C C T C T T C T C C C T
rs264425594
MGI SNP Detail
Chr5:75311475 Rr125352 within coordinates of
Tssr46684 566 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227965403
MGI SNP Detail
Chr5:75311606 Rr125352 within coordinates of
Tssr46684 435 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245695935
MGI SNP Detail
Chr5:75311611 Rr125352 within coordinates of
Tssr46684 430 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs256967673
MGI SNP Detail
Chr5:75311618 Rr125352 within coordinates of
Tssr46684 423 bp upstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs225905860
MGI SNP Detail
Chr5:75311626 Rr125352 within coordinates of
Tssr46684 415 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs250964770
MGI SNP Detail
Chr5:75311708 Rr125352 within coordinates of
Tssr46684 333 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs578473138
MGI SNP Detail
Chr5:75311800 Rr125352 within coordinates of
Tssr46684 241 bp upstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs581676663
MGI SNP Detail
Chr5:75311803 Rr125352 within coordinates of
Tssr46684 238 bp upstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs580078637
MGI SNP Detail
Chr5:75311824 Rr125352 within coordinates of
Tssr46684 217 bp upstream
SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs582261444
MGI SNP Detail
Chr5:75311827 Rr125352 within coordinates of
Tssr46684 214 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T A T T T T T T T T T T
rs213624497
MGI SNP Detail
Chr5:75311848 Rr125352 within coordinates of
Tssr46684 193 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A
rs234973284
MGI SNP Detail
Chr5:75311849 Rr125352 within coordinates of
Tssr46684 192 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs260525948
MGI SNP Detail
Chr5:75311850 Rr125352 within coordinates of
Tssr46684 191 bp upstream
SNP A/C C C C C C A A C C A C C C C C C C A C C A C A C A A C C C C C C A C C C C C A C C A C C C C C
rs218602890
MGI SNP Detail
Chr5:75311852 Rr125352 within coordinates of
Tssr46684 189 bp upstream
SNP A/C C C C C C A A C C A C C C C C C C A C C A C A C A A C C C C C C A C C C C C A C C A C C C C C C C
rs234809527
MGI SNP Detail
Chr5:75311854 Rr125352 within coordinates of
Tssr46684 187 bp upstream
SNP A/C C C C C C A A C C A C C C C C C C A C C A C A C A A C C C C C C C C C C C A C C A C C A C C C C
rs252966567
MGI SNP Detail
Chr5:75311860 Rr125352 within coordinates of
Tssr46684 181 bp upstream
SNP A/C A C C C A C C A A A C C A C C C C C C C C C C A C C C C A C A A A C
rs220438824
MGI SNP Detail
Chr5:75311958 Cpgi15981 within coordinates of
Rr125352 within coordinates of
Tssr46684 83 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs232026037
MGI SNP Detail
Chr5:75312119 Cpgi15981 within coordinates of
Rr125352 within coordinates of
Tssr46684 58 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A A
rs256937956
MGI SNP Detail
Chr5:75312121 Cpgi15981 within coordinates of
Rr125352 within coordinates of
Tssr46684 60 bp downstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs220884344
MGI SNP Detail
Chr5:75312504 Rr125352 within coordinates of
Tssr46684 443 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A G A A A
rs241035292
MGI SNP Detail
Chr5:75312608 Rr125352 within coordinates of
Tssr46684 547 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A A A A A A A A G A A A A A A A A A A A A
rs264180917
MGI SNP Detail
Chr5:75312609 Rr125352 within coordinates of
Tssr46684 548 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs221936713
MGI SNP Detail
Chr5:75312657 Rr125352 within coordinates of
Tssr46684 596 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239691775
MGI SNP Detail
Chr5:75312848 Rr125352 within coordinates of
Tssr46684 787 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs256896766
MGI SNP Detail
Chr5:75312898 Rr125352 within coordinates of
Tssr46684 837 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs33249180
MGI SNP Detail
Chr5:75312951 Rr125352 within coordinates of
Tssr46684 890 bp downstream
Tssr46686 within coordinates of
SNP C/T C C C T C T C T C T C C C T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245665928
MGI SNP Detail
Chr5:75312993 Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 932 bp downstream
Tssr46687 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs261836094
MGI SNP Detail
Chr5:75313008 Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 947 bp downstream
Tssr46687 within coordinates of
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs228552169
MGI SNP Detail
Chr5:75313043 Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 982 bp downstream
SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs254973462
MGI SNP Detail
Chr5:75313054 Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 993 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217010068
MGI SNP Detail
Chr5:75313265 Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1204 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs580002180
MGI SNP Detail
Chr5:75313290 Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1229 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A
rs583996701
MGI SNP Detail
Chr5:75313361 Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1300 bp downstream
SNP A/T T T T T T A A T T A T T T T T T T A A T A T A A A T T T T T A T T T A T A T T A T T T T A
rs228335354
MGI SNP Detail
Chr5:75313386 Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1325 bp downstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
rs246549735
MGI SNP Detail
Chr5:75313625 Cpgi15982 within coordinates of
Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1564 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214497738
MGI SNP Detail
Chr5:75313784 Cpgi15982 within coordinates of
Gm42802 within coordinates of
Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1723 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs33370327
MGI SNP Detail
Chr5:75313815 Cpgi15982 within coordinates of
Gm42802 within coordinates of
Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1754 bp downstream
SNP A/G G G G A G A A G A G G G G G
rs586981658
MGI SNP Detail
Chr5:75313923 Cpgi15982 within coordinates of
Gm42802 within coordinates of
Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1862 bp downstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs579588846
MGI SNP Detail
Chr5:75313927 Cpgi15982 within coordinates of
Gm42802 within coordinates of
Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1866 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261642888
MGI SNP Detail
Chr5:75313994 Cpgi15982 within coordinates of
Gm42802 within coordinates of
Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1933 bp downstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs212205825
MGI SNP Detail
Chr5:75314020 Cpgi15982 within coordinates of
Gm42802 within coordinates of
Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1959 bp downstream
SNP G/T G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs236028799
MGI SNP Detail
Chr5:75314026 Cpgi15982 within coordinates of
Gm42802 within coordinates of
Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1965 bp downstream
SNP A/G A A A A A A G G A A G G A A A A A A A A G A A G G A G A G G A A A A A A G A A A A A G G A G A A G G A G G
rs260821182
MGI SNP Detail
Chr5:75314037 Cpgi15982 within coordinates of
Gm42802 within coordinates of
Pdgfra within coordinates of
Rr125352 within coordinates of
Tssr46684 1976 bp downstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
<< first < prev1 next > last >>
Showing SNP(s) 1 - 67 of 67

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory